Usage: python [CohortInteg code name] [input folder] [output folder] [qva] 0.1 Step 1 : Process maf files: - Output folder: /lab/cedar/home/hgovinda/Cohort-Integration/CohortIntegration/Data/20200701_090422/output/Processed_MAF/ -tokheimMAF_maftools.maf Non TCGA ID found: N691T