Usage: python [CohortInteg code name] [input folder] [output folder] [qva] 0.1 Step 1 : Process maf files: - Output folder: /lab/cedar/home/hgovinda/Cohort-Integration/CohortIntegration/Data/20220126_082735/output/Processed_MAF/ -pancan-mutation-set-from-Tokheim-2016-SKCMonly_MAF.maf Non TCGA ID found: Mel_BRAFi_02