load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/5x29.pdb, 5x29_Normalized_Unique_Var_Count select to_keep, 5x29_Normalized_Unique_Var_Count select to_remove, 5x29_Normalized_Unique_Var_Count and (not to_keep) remove to_remove delete to_keep delete to_remove select target_chain, 5x29_Normalized_Unique_Var_Count color white, target_chain delete target_chain select curr_residues, 5x29_Normalized_Unique_Var_Count and resi 8+19+21+41 color 0xD8FF00, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Unique_Var_Count and resi 9+10+16+17+22+23+25+26+28+29+32+33+36+38+39+43+46+47+48+49+51+52+53+54+55+59+62 color 0x0072FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Unique_Var_Count and resi 20+24+30+50+58+61+64 color 0x00FF59, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Unique_Var_Count and resi 37 color 0xFF0000, curr_residues delete curr_residues save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_envelopeprotein/structure/5x29_Normalized_Unique_Var_Count.pse, 5x29_Normalized_Unique_Var_Count, -1, pse load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/5x29.pdb, 5x29_Normalized_Var_Count select to_keep, 5x29_Normalized_Var_Count select to_remove, 5x29_Normalized_Var_Count and (not to_keep) remove to_remove delete to_keep delete to_remove select target_chain, 5x29_Normalized_Var_Count color white, target_chain delete target_chain select curr_residues, 5x29_Normalized_Var_Count and resi 8 color 0x00C7FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Var_Count and resi 9 color 0x00FF59, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Var_Count and resi 10+25+38+50+52+64 color 0x8200FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Var_Count and resi 16+17+22+23+28+29+32+33+39+46+47+48+51+54+59 color 0x9B00FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Var_Count and resi 19+37 color 0x2000FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Var_Count and resi 20 color 0x00FF7E, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Var_Count and resi 21 color 0x00FFBB, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Var_Count and resi 24 color 0x0041FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Var_Count and resi 26+36+53+61 color 0x3900FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Var_Count and resi 30 color 0x00FF96, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Var_Count and resi 41+58 color 0x00FFF8, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Var_Count and resi 43 color 0x0004FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Var_Count and resi 49 color 0x001CFF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Var_Count and resi 55 color 0xFFF400, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Var_Count and resi 62 color 0xFF0000, curr_residues delete curr_residues save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_envelopeprotein/structure/5x29_Normalized_Var_Count.pse, 5x29_Normalized_Var_Count, -1, pse load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/5x29.pdb, 5x29_Normalized_Highest_Freq_Var_Count select to_keep, 5x29_Normalized_Highest_Freq_Var_Count select to_remove, 5x29_Normalized_Highest_Freq_Var_Count and (not to_keep) remove to_remove delete to_keep delete to_remove select target_chain, 5x29_Normalized_Highest_Freq_Var_Count color white, target_chain delete target_chain select curr_residues, 5x29_Normalized_Highest_Freq_Var_Count and resi 8 color 0x007EFF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Highest_Freq_Var_Count and resi 9 color 0x00FF59, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Highest_Freq_Var_Count and resi 10+25+37+38+52+61 color 0x8200FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Highest_Freq_Var_Count and resi 16+17+22+23+28+29+32+33+39+46+47+48+50+51+54+59+64 color 0x9B00FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Highest_Freq_Var_Count and resi 19 color 0x5D00FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Highest_Freq_Var_Count and resi 20 color 0x00C7FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Highest_Freq_Var_Count and resi 21 color 0x00FFF8, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Highest_Freq_Var_Count and resi 24+41+49 color 0x001CFF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Highest_Freq_Var_Count and resi 26+36+53 color 0x3900FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Highest_Freq_Var_Count and resi 30 color 0x00FFBB, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Highest_Freq_Var_Count and resi 43 color 0x0004FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Highest_Freq_Var_Count and resi 55 color 0xFFF400, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Highest_Freq_Var_Count and resi 58 color 0x0066FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Highest_Freq_Var_Count and resi 62 color 0xFF0000, curr_residues delete curr_residues save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_envelopeprotein/structure/5x29_Normalized_Highest_Freq_Var_Count.pse, 5x29_Normalized_Highest_Freq_Var_Count, -1, pse load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/5x29.pdb, 5x29_Inverse_ET select to_keep, 5x29_Inverse_ET select to_remove, 5x29_Inverse_ET and (not to_keep) remove to_remove delete to_keep delete to_remove select target_chain, 5x29_Inverse_ET color white, target_chain delete target_chain select curr_residues, 5x29_Inverse_ET and resi 8 color 0x20FF00, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 9 color 0x00C7FF, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 10 color 0xFF6100, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 11 color 0x0096FF, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 12 color 0x00FFD4, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 13 color 0xFF5500, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 14 color 0xF0FF00, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 15 color 0xFF7A00, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 16 color 0x76FF00, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 17 color 0xFFE800, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 18 color 0x00FFAF, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 19 color 0x00FF10, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 20 color 0x00FF72, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 21 color 0x00FF4D, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 22 color 0x00F8FF, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 23 color 0x8EFF00, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 24 color 0xBFFF00, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 25 color 0x00FFA3, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 26 color 0x0028FF, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 27 color 0xFF8600, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 28 color 0x00FF10, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 29 color 0xB3FF00, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 30 color 0x0096FF, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 31 color 0x00FF7E, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 32+34+39+54 color 0xFF3000, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 33 color 0x00FFF8, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 35 color 0xFF9200, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 36 color 0x5DFF00, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 37 color 0x008AFF, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 38 color 0xFFF400, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 40 color 0xFFDC00, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 41 color 0x00FFC7, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 42 color 0x00FF41, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 43 color 0xD8FF00, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 44 color 0x0800FF, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 45 color 0x0004FF, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 46 color 0xA7FF00, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 47 color 0x0066FF, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 48 color 0xFFB700, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 49 color 0x00FF35, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 50 color 0x45FF00, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 51 color 0x2CFF00, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 52 color 0x82FF00, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 53 color 0x00FF96, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 55 color 0x00FF66, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 56 color 0x5D00FF, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 57 color 0xFFC300, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 58 color 0x00ECFF, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 59 color 0xFF4900, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 60 color 0x00FFE0, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 61 color 0x0041FF, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 62 color 0x0072FF, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 63 color 0x0059FF, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 64 color 0x0035FF, curr_residues delete curr_residues select curr_residues, 5x29_Inverse_ET and resi 65 color 0x3900FF, curr_residues delete curr_residues save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_envelopeprotein/structure/5x29_Inverse_ET.pse, 5x29_Inverse_ET, -1, pse load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/5x29.pdb, 5x29_Rescaled_EA_Highest_Freq select to_keep, 5x29_Rescaled_EA_Highest_Freq select to_remove, 5x29_Rescaled_EA_Highest_Freq and (not to_keep) remove to_remove delete to_keep delete to_remove select target_chain, 5x29_Rescaled_EA_Highest_Freq color white, target_chain delete target_chain select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 8 color 0x0041FF, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 9 color 0x0035FF, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 10 color 0xD8FF00, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 16 color 0x00FF7E, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 17 color 0x08FF00, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 19 color 0x0072FF, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 20 color 0x008AFF, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 21 color 0x0041FF, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 22 color 0x2C00FF, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 23 color 0x00FF04, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 24 color 0x00FF59, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 25 color 0x007EFF, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 26 color 0x9B00FF, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 28 color 0x004DFF, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 29 color 0x00FF4D, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 30 color 0x0041FF, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 32 color 0xFFF400, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 33 color 0x00E0FF, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 36 color 0x00FFAF, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 37 color 0x2000FF, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 38 color 0xFFF400, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 39 color 0x00FF35, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 41 color 0x0059FF, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 43 color 0xFFAB00, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 46 color 0x0041FF, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 47 color 0x0010FF, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 48 color 0x00FF28, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 49 color 0x00D4FF, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 50 color 0x9BFF00, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 51 color 0x00BBFF, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 52 color 0x00FF96, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 53 color 0x3900FF, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 54 color 0xFFC300, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 55 color 0x51FF00, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 58 color 0x0059FF, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 59 color 0x08FF00, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 61 color 0x00FFBB, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 62 color 0x00FF28, curr_residues delete curr_residues select curr_residues, 5x29_Rescaled_EA_Highest_Freq and resi 64 color 0x4500FF, curr_residues delete curr_residues save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_envelopeprotein/structure/5x29_Rescaled_EA_Highest_Freq.pse, 5x29_Rescaled_EA_Highest_Freq, -1, pse load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/5x29.pdb, 5x29_Normalized_Atom_SA select to_keep, 5x29_Normalized_Atom_SA select to_remove, 5x29_Normalized_Atom_SA and (not to_keep) remove to_remove delete to_keep delete to_remove select target_chain, 5x29_Normalized_Atom_SA color white, target_chain delete target_chain select curr_residues, 5x29_Normalized_Atom_SA and resi 8+12+13+18+19+31+51+58+59+65 color 0x00FFBB, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 8+11+12+13+15+18+21+23+24+28+29+30+31+32+34+35+39+40+41+42+43+45+52+53+54+56+59+60+63 color 0xB300FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 8+9+18+38+53+55+57+63+64 color 0x0096FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 8+11+13+16+17+19+20+23+26+30+39+40+42+43+46+48+53+54+58+59+62+65 color 0x8E00FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 8+14+23+27+29+31+32+36+38+44+56+59+61+65 color 0x1400FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 8 color 0xFF2400, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 8 color 0xFF0000, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 8+9+27+29+33+40+46+47+50+58 color 0x00D4FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 8+13+23+33+42+57+65 color 0x00E0FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 8+17+26+27+29+30+34+45+47+48+60+62 color 0x008AFF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 8+10+26+44+45+51+55+56+57+62+65 color 0x0028FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 8+17+18+31+35+42+44+47+51+54+57 color 0x0010FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 9+11+13+14+16+21+24+28+31+32+33+35+37+38+39+41+48+52+65 color 0x0004FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 9+21+26+48+58 color 0x00FFA3, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 9+10+15+17+18+21+24+29+33+37+39+42+57+61+64 color 0x6A00FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 9+12+13+14+21+23+27+33+45+46+49+52+61+62+63 color 0x0800FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 9+23+28+36+39+47+62 color 0x00FFAF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 9+38+59 color 0x00FF59, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 9+17+21+42+44+45+53+61+65 color 0x00FFC7, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 10+15+20+23+25+27+28+31+38+40+41+50+53+55+56+57+59 color 0x8200FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 10+11+12+13+17+18+19+21+23+25+36+38+39+45+49+51+52+53+57+58+61+63+64+65 color 0x9B00FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 10+20+30 color 0x00FF1C, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 10+61 color 0x00FF41, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 10+13+15+37+39+46+48+49+53+62 color 0x00F8FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 11+18+19+20+26+37+41+42+43+44+50+51+53+56+57+59+65 color 0x2000FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 11+14+17+21+22+24+27+31+33+38+47+51+53+57+58+59+60+63+64 color 0xA700FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 11+26+28+52+62+65 color 0x0096FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 11+12+21+32+41+52+54 color 0x00FF8A, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 11+16+18+19+23+26+27+29+31+33+34+45+50+54+60+61 color 0x5D00FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 12+14+20+28+36+37+46+56 color 0x0066FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 12+16+18+20+22+35+38+42+51+63+65 color 0x007EFF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 12+20+25+33+38+41+42+51+59+63 color 0x00AFFF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 12+14+37+52+56 color 0x00FF96, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 12+20+23+35+37+43+46+47+49+55+59 color 0x2C00FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 13+22+33+38+47+53+55 color 0x00C7FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 13+19+21+24+27+28+49+52+56 color 0x00FF7E, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 14+24+36+65 color 0x0072FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 14+18+19+25+27+29+32+34+38+48+49+51+57+61+62 color 0x3900FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 15+28+31+38+39 color 0x5100FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 15 color 0xE4FF00, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 15+17+21+23+49+60 color 0x00FFF8, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 15+26+53+61+63+65 color 0x0035FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 16+32+48+55+56 color 0x004DFF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 17+29+45+46+53 color 0x00FFEC, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 17+18+24+30+32+34+46+59+61+65 color 0x0041FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 18+20+28+37 color 0x00FFD4, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 19+23+24+25+29+38+53 color 0x00FFE0, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 20+21+22+26+33+35+38+40+42+45+51+52+57+58+61 color 0x7600FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 20+26+38+57+60+64 color 0x001CFF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 20+26 color 0x00FF10, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 22+24+28+36+42+45+46+49+50+52+60+61+62+63 color 0x4500FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 24+41+46+47+52+54+58+59 color 0x0059FF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 25+28+30+54+63 color 0x00BBFF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 26+41+53+63 color 0x00FF4D, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 35+42+59 color 0x00FF35, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 38+42 color 0x00FF72, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 40+50+53 color 0x00ECFF, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 42+59+64 color 0x82FF00, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 48+53+57+63 color 0x2CFF00, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 57 color 0x00FF66, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 63 color 0x20FF00, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 64 color 0xD8FF00, curr_residues delete curr_residues select curr_residues, 5x29_Normalized_Atom_SA and resi 65 color 0xFF3000, curr_residues delete curr_residues save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_envelopeprotein/structure/5x29_Normalized_Atom_SA.pse, 5x29_Normalized_Atom_SA, -1, pse load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/5x29.pdb, 5x29_Linear_Epitopes select to_keep, 5x29_Linear_Epitopes select to_remove, 5x29_Linear_Epitopes and (not to_keep) remove to_remove delete to_keep delete to_remove select target_chain, 5x29_Linear_Epitopes color white, target_chain delete target_chain select curr_residues, 5x29_Linear_Epitopes and resi 13 color 0xFF5500, curr_residues delete curr_residues select curr_residues, 5x29_Linear_Epitopes and resi 14 color 0xF0FF00, curr_residues delete curr_residues select curr_residues, 5x29_Linear_Epitopes and resi 15 color 0xFF7A00, curr_residues delete curr_residues select curr_residues, 5x29_Linear_Epitopes and resi 34 color 0xFF3000, curr_residues delete curr_residues select curr_residues, 5x29_Linear_Epitopes and resi 35 color 0xFF9200, curr_residues delete curr_residues save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_envelopeprotein/structure/5x29_Linear_Epitopes.pse, 5x29_Linear_Epitopes, -1, pse load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/5x29.pdb, 5x29_Structural_Epitopes_3A select to_keep, 5x29_Structural_Epitopes_3A select to_remove, 5x29_Structural_Epitopes_3A and (not to_keep) remove to_remove delete to_keep delete to_remove select target_chain, 5x29_Structural_Epitopes_3A color white, target_chain delete target_chain select curr_residues, 5x29_Structural_Epitopes_3A and resi 14 color 0xF0FF00, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_3A and resi 15 color 0xFF7A00, curr_residues delete curr_residues save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_envelopeprotein/structure/5x29_Structural_Epitopes_3A.pse, 5x29_Structural_Epitopes_3A, -1, pse load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/5x29.pdb, 5x29_Structural_Epitopes_4A select to_keep, 5x29_Structural_Epitopes_4A select to_remove, 5x29_Structural_Epitopes_4A and (not to_keep) remove to_remove delete to_keep delete to_remove select target_chain, 5x29_Structural_Epitopes_4A color white, target_chain delete target_chain select curr_residues, 5x29_Structural_Epitopes_4A and resi 13 color 0xFF5500, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_4A and resi 14 color 0xF0FF00, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_4A and resi 15 color 0xFF7A00, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_4A and resi 34 color 0xFF3000, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_4A and resi 35 color 0xFF9200, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_4A and resi 40 color 0xFFDC00, curr_residues delete curr_residues save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_envelopeprotein/structure/5x29_Structural_Epitopes_4A.pse, 5x29_Structural_Epitopes_4A, -1, pse load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/5x29.pdb, 5x29_Structural_Epitopes_5A select to_keep, 5x29_Structural_Epitopes_5A select to_remove, 5x29_Structural_Epitopes_5A and (not to_keep) remove to_remove delete to_keep delete to_remove select target_chain, 5x29_Structural_Epitopes_5A color white, target_chain delete target_chain select curr_residues, 5x29_Structural_Epitopes_5A and resi 13 color 0xFF5500, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_5A and resi 14 color 0xF0FF00, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_5A and resi 15 color 0xFF7A00, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_5A and resi 34 color 0xFF3000, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_5A and resi 35 color 0xFF9200, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_5A and resi 40 color 0xFFDC00, curr_residues delete curr_residues save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_envelopeprotein/structure/5x29_Structural_Epitopes_5A.pse, 5x29_Structural_Epitopes_5A, -1, pse load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/5x29.pdb, 5x29_Structural_Epitopes_6A select to_keep, 5x29_Structural_Epitopes_6A select to_remove, 5x29_Structural_Epitopes_6A and (not to_keep) remove to_remove delete to_keep delete to_remove select target_chain, 5x29_Structural_Epitopes_6A color white, target_chain delete target_chain select curr_residues, 5x29_Structural_Epitopes_6A and resi 13 color 0xFF5500, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_6A and resi 14 color 0xF0FF00, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_6A and resi 15 color 0xFF7A00, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_6A and resi 27 color 0xFF8600, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_6A and resi 34 color 0xFF3000, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_6A and resi 35 color 0xFF9200, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_6A and resi 40 color 0xFFDC00, curr_residues delete curr_residues save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_envelopeprotein/structure/5x29_Structural_Epitopes_6A.pse, 5x29_Structural_Epitopes_6A, -1, pse load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/5x29.pdb, 5x29_Structural_Epitopes_7A select to_keep, 5x29_Structural_Epitopes_7A select to_remove, 5x29_Structural_Epitopes_7A and (not to_keep) remove to_remove delete to_keep delete to_remove select target_chain, 5x29_Structural_Epitopes_7A color white, target_chain delete target_chain select curr_residues, 5x29_Structural_Epitopes_7A and resi 13 color 0xFF5500, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_7A and resi 14 color 0xF0FF00, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_7A and resi 15 color 0xFF7A00, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_7A and resi 27 color 0xFF8600, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_7A and resi 34 color 0xFF3000, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_7A and resi 35 color 0xFF9200, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_7A and resi 40 color 0xFFDC00, curr_residues delete curr_residues save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_envelopeprotein/structure/5x29_Structural_Epitopes_7A.pse, 5x29_Structural_Epitopes_7A, -1, pse load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/5x29.pdb, 5x29_Structural_Epitopes_7.5A select to_keep, 5x29_Structural_Epitopes_7.5A select to_remove, 5x29_Structural_Epitopes_7.5A and (not to_keep) remove to_remove delete to_keep delete to_remove select target_chain, 5x29_Structural_Epitopes_7.5A color white, target_chain delete target_chain select curr_residues, 5x29_Structural_Epitopes_7.5A and resi 13 color 0xFF5500, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_7.5A and resi 14 color 0xF0FF00, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_7.5A and resi 15 color 0xFF7A00, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_7.5A and resi 27 color 0xFF8600, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_7.5A and resi 34 color 0xFF3000, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_7.5A and resi 35 color 0xFF9200, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_7.5A and resi 40 color 0xFFDC00, curr_residues delete curr_residues save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_envelopeprotein/structure/5x29_Structural_Epitopes_7.5A.pse, 5x29_Structural_Epitopes_7.5A, -1, pse load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/5x29.pdb, 5x29_Structural_Epitopes_8A select to_keep, 5x29_Structural_Epitopes_8A select to_remove, 5x29_Structural_Epitopes_8A and (not to_keep) remove to_remove delete to_keep delete to_remove select target_chain, 5x29_Structural_Epitopes_8A color white, target_chain delete target_chain select curr_residues, 5x29_Structural_Epitopes_8A and resi 13 color 0xFF5500, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_8A and resi 14 color 0xF0FF00, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_8A and resi 15 color 0xFF7A00, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_8A and resi 27 color 0xFF8600, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_8A and resi 34 color 0xFF3000, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_8A and resi 35 color 0xFF9200, curr_residues delete curr_residues select curr_residues, 5x29_Structural_Epitopes_8A and resi 40 color 0xFFDC00, curr_residues delete curr_residues save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_envelopeprotein/structure/5x29_Structural_Epitopes_8A.pse, 5x29_Structural_Epitopes_8A, -1, pse set grid_mode, 1 save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_envelopeprotein/structure/5x29_combined.pse, 5x29_Normalized_Unique_Var_Count or 5x29_Normalized_Var_Count or 5x29_Normalized_Highest_Freq_Var_Count or 5x29_Inverse_ET or 5x29_Rescaled_EA_Highest_Freq or 5x29_Normalized_Atom_SA or 5x29_Linear_Epitopes or 5x29_Structural_Epitopes_3A or 5x29_Structural_Epitopes_4A or 5x29_Structural_Epitopes_5A or 5x29_Structural_Epitopes_6A or 5x29_Structural_Epitopes_7A or 5x29_Structural_Epitopes_7.5A or 5x29_Structural_Epitopes_8A, -1, pse delete all