load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w37.pdb, 6w37_Normalized_Unique_Var_Count
select to_keep, 6w37_Normalized_Unique_Var_Count
select to_remove, 6w37_Normalized_Unique_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w37_Normalized_Unique_Var_Count
color white, target_chain
delete target_chain
select curr_residues, 6w37_Normalized_Unique_Var_Count and resi 1+14+17+22+23+30+34+35+39+42+52+54+64
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Unique_Var_Count and resi 2+3+5+6+7+8+13+15+16+24+25+27+29+31+40+48+50+57
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Unique_Var_Count and resi 9+10+18+19+21+26+33+36+37+41+47+49+51+53+55+56+58+59+60+61+66
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Unique_Var_Count and resi 28+32+45+65
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Unique_Var_Count and resi 63
color 0xFF0000, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF7a/structure/6w37_Normalized_Unique_Var_Count.pse, 6w37_Normalized_Unique_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w37.pdb, 6w37_Normalized_Var_Count
select to_keep, 6w37_Normalized_Var_Count
select to_remove, 6w37_Normalized_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w37_Normalized_Var_Count
color white, target_chain
delete target_chain
select curr_residues, 6w37_Normalized_Var_Count and resi 1+24
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Var_Count and resi 2+3+6+15+16+18+25+27+31+33+37+41+55+57
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Var_Count and resi 5+40
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Var_Count and resi 7+39+47+52+53+56+61
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Var_Count and resi 8+10+28+29+45+49+54+64
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Var_Count and resi 9+34+36+65
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Var_Count and resi 13
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Var_Count and resi 14+17+21+22+50
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Var_Count and resi 19+63
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Var_Count and resi 23+32
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Var_Count and resi 26+42+51+60
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Var_Count and resi 30+48
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Var_Count and resi 35
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Var_Count and resi 58
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Var_Count and resi 59
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Var_Count and resi 66
color 0xFF0000, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF7a/structure/6w37_Normalized_Var_Count.pse, 6w37_Normalized_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w37.pdb, 6w37_Normalized_Highest_Freq_Var_Count
select to_keep, 6w37_Normalized_Highest_Freq_Var_Count
select to_remove, 6w37_Normalized_Highest_Freq_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w37_Normalized_Highest_Freq_Var_Count
color white, target_chain
delete target_chain
select curr_residues, 6w37_Normalized_Highest_Freq_Var_Count and resi 1
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Highest_Freq_Var_Count and resi 2+3+6+15+16+18+25+26+27+28+31+33+37+41+42+45+51+55+57+60+64
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Highest_Freq_Var_Count and resi 5+40+53+63+65
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Highest_Freq_Var_Count and resi 7+9+30+34+47
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Highest_Freq_Var_Count and resi 8+29+36+39+52+56+61
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Highest_Freq_Var_Count and resi 10+49+54
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Highest_Freq_Var_Count and resi 13
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Highest_Freq_Var_Count and resi 14+19
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Highest_Freq_Var_Count and resi 17+22+48
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Highest_Freq_Var_Count and resi 21+59
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Highest_Freq_Var_Count and resi 23
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Highest_Freq_Var_Count and resi 24
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Highest_Freq_Var_Count and resi 32
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Highest_Freq_Var_Count and resi 35
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Highest_Freq_Var_Count and resi 50
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Highest_Freq_Var_Count and resi 58
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Highest_Freq_Var_Count and resi 66
color 0xFF3000, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF7a/structure/6w37_Normalized_Highest_Freq_Var_Count.pse, 6w37_Normalized_Highest_Freq_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w37.pdb, 6w37_Inverse_ET
select to_keep, 6w37_Inverse_ET
select to_remove, 6w37_Inverse_ET and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w37_Inverse_ET
color white, target_chain
delete target_chain
select curr_residues, 6w37_Inverse_ET and resi 1
color 0x82FF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 2
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 3+34+35+48
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 4
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 5+8+11+19+20+26+30
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 6
color 0x39FF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 7+15+27+28+32+33+39+40+43+58+61+62+64
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 9
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 10
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 12
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 13
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 14+18+25+54+65
color 0x00FF04, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 16
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 17
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 21
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 22
color 0x51FF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 23
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 24+36
color 0x6AFF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 29+51
color 0x8EFF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 31
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 37
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 38+63
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 41
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 42
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 44
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 45
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 46
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 47
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 49
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 50+52
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 53
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 55
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 56
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 57
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 59
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 60
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Inverse_ET and resi 66
color 0x00FF59, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF7a/structure/6w37_Inverse_ET.pse, 6w37_Inverse_ET, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w37.pdb, 6w37_Rescaled_EA_Highest_Freq
select to_keep, 6w37_Rescaled_EA_Highest_Freq
select to_remove, 6w37_Rescaled_EA_Highest_Freq and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w37_Rescaled_EA_Highest_Freq
color white, target_chain
delete target_chain
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 1
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 2
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 3
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 5
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 6
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 7
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 8
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 9
color 0x004DFF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 10
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 13
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 14
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 15
color 0xFF1800, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 16
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 17
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 18
color 0xCBFF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 19
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 21
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 22
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 23
color 0x2CFF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 24
color 0x45FF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 25
color 0x004DFF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 26
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 27
color 0xFF2400, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 28
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 29
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 30
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 31
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 32
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 33
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 34
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 35
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 36
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 37
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 39
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 40
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 41
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 42
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 45
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 47
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 48
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 49
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 50
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 51
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 52
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 53
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 54
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 55
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 56
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 57
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 58
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 59
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 60
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 61
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 63
color 0x76FF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 64
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 65
color 0x8EFF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Rescaled_EA_Highest_Freq and resi 66
color 0x51FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF7a/structure/6w37_Rescaled_EA_Highest_Freq.pse, 6w37_Rescaled_EA_Highest_Freq, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w37.pdb, 6w37_Normalized_Atom_SA
select to_keep, 6w37_Normalized_Atom_SA
select to_remove, 6w37_Normalized_Atom_SA and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w37_Normalized_Atom_SA
color white, target_chain
delete target_chain
select curr_residues, 6w37_Normalized_Atom_SA and resi 1+6+25+54
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 1+18+24+32+38
color 0x004DFF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 1+6+7+8+11+14+21+23+28+31+34+44+47+48+50+51+62+63+66
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 1+10+17+26+36+42+43
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 1+7+45
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 1+12+38
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 2+4+14+16+20+28+30+31+41+45+48+54+61
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 2+7+12+22+31+47+60
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 2
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 2
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 3+4+6+7+15+28+29+44+53
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 3+4+12+17+20+23+25+30+32+33+37+38+40+41+44+46+48+49+51+52+53+56+57+58+61+62+63+65
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 3+19+28+30+61
color 0x00FF4D, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 3+16+59
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 3+4+5+16+18+24+25+36+37+44+46+48+60+65
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 3+18+29+31+57
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 3
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 3+10+66
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 3+4+7
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 3+5+8+11+16+20+24+26+29+32+34+35+42+47+55+62+65
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 3+53
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 4+25+46
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 4+12+17+20+21+26+44+46
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 4+5+27+54
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 5+6+10+13+28+29+36+41+65
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 5+10+15+25+29+31+36+40+41+46+47+51+53+54+57+61
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 5+31+34+53
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 5+49+65
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 5+6+12+13+25+36+54+63
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 5+33+34
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 5+15+28+40
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 5+19+35+45
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 6+21+22+32+44
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 7+33
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 9+18+19+21+27+37+39+45+46+48+50+52+56+57+60+66
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 9
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 9
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 10+11
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 10+17
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 10+17+30+45
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 10+36+55+65
color 0x82FF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 11+17+55
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 13+42
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 13+58
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 13+21
color 0x76FF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 15+33+44+65+66
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 15+22+23
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 15
color 0x51FF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 17
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 20+30
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 21
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 22
color 0x2CFF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 24
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 24
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 25+36+53+59
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 25+34+60+63
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 26+38
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 26
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 26
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 28+31+33+47+64
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 28
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 30
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 32+65
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 34+66
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 35
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 36
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 37
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 37+53+54
color 0x14FF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 42
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 44+57+63
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 47
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 47
color 0x45FF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 51
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 52
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 56
color 0x00FF04, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 57
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 61
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 63
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 63
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 6w37_Normalized_Atom_SA and resi 66
color 0xFCFF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF7a/structure/6w37_Normalized_Atom_SA.pse, 6w37_Normalized_Atom_SA, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w37.pdb, 6w37_Linear_Epitopes
select to_keep, 6w37_Linear_Epitopes
select to_remove, 6w37_Linear_Epitopes and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w37_Linear_Epitopes
color white, target_chain
delete target_chain
select curr_residues, 6w37_Linear_Epitopes and resi 11
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6w37_Linear_Epitopes and resi 12
color 0xFFF400, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF7a/structure/6w37_Linear_Epitopes.pse, 6w37_Linear_Epitopes, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w37.pdb, 6w37_Structural_Epitopes_3A
select to_keep, 6w37_Structural_Epitopes_3A
select to_remove, 6w37_Structural_Epitopes_3A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w37_Structural_Epitopes_3A
color white, target_chain
delete target_chain
select curr_residues, 6w37_Structural_Epitopes_3A and resi 11
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_3A and resi 12
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_3A and resi 46
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_3A and resi 62
color 0xFFDC00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF7a/structure/6w37_Structural_Epitopes_3A.pse, 6w37_Structural_Epitopes_3A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w37.pdb, 6w37_Structural_Epitopes_4A
select to_keep, 6w37_Structural_Epitopes_4A
select to_remove, 6w37_Structural_Epitopes_4A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w37_Structural_Epitopes_4A
color white, target_chain
delete target_chain
select curr_residues, 6w37_Structural_Epitopes_4A and resi 11
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_4A and resi 12
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_4A and resi 43+62
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_4A and resi 46
color 0xF0FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF7a/structure/6w37_Structural_Epitopes_4A.pse, 6w37_Structural_Epitopes_4A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w37.pdb, 6w37_Structural_Epitopes_5A
select to_keep, 6w37_Structural_Epitopes_5A
select to_remove, 6w37_Structural_Epitopes_5A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w37_Structural_Epitopes_5A
color white, target_chain
delete target_chain
select curr_residues, 6w37_Structural_Epitopes_5A and resi 11
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_5A and resi 12
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_5A and resi 43+62
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_5A and resi 46
color 0xF0FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF7a/structure/6w37_Structural_Epitopes_5A.pse, 6w37_Structural_Epitopes_5A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w37.pdb, 6w37_Structural_Epitopes_6A
select to_keep, 6w37_Structural_Epitopes_6A
select to_remove, 6w37_Structural_Epitopes_6A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w37_Structural_Epitopes_6A
color white, target_chain
delete target_chain
select curr_residues, 6w37_Structural_Epitopes_6A and resi 11
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_6A and resi 12
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_6A and resi 43+62
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_6A and resi 46
color 0xF0FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF7a/structure/6w37_Structural_Epitopes_6A.pse, 6w37_Structural_Epitopes_6A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w37.pdb, 6w37_Structural_Epitopes_7A
select to_keep, 6w37_Structural_Epitopes_7A
select to_remove, 6w37_Structural_Epitopes_7A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w37_Structural_Epitopes_7A
color white, target_chain
delete target_chain
select curr_residues, 6w37_Structural_Epitopes_7A and resi 11
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_7A and resi 12
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_7A and resi 43+62
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_7A and resi 46
color 0xF0FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF7a/structure/6w37_Structural_Epitopes_7A.pse, 6w37_Structural_Epitopes_7A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w37.pdb, 6w37_Structural_Epitopes_7.5A
select to_keep, 6w37_Structural_Epitopes_7.5A
select to_remove, 6w37_Structural_Epitopes_7.5A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w37_Structural_Epitopes_7.5A
color white, target_chain
delete target_chain
select curr_residues, 6w37_Structural_Epitopes_7.5A and resi 4
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_7.5A and resi 11
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_7.5A and resi 12
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_7.5A and resi 43+62
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_7.5A and resi 46
color 0xF0FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF7a/structure/6w37_Structural_Epitopes_7.5A.pse, 6w37_Structural_Epitopes_7.5A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w37.pdb, 6w37_Structural_Epitopes_8A
select to_keep, 6w37_Structural_Epitopes_8A
select to_remove, 6w37_Structural_Epitopes_8A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w37_Structural_Epitopes_8A
color white, target_chain
delete target_chain
select curr_residues, 6w37_Structural_Epitopes_8A and resi 4
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_8A and resi 11
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_8A and resi 12
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_8A and resi 43+62
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6w37_Structural_Epitopes_8A and resi 46
color 0xF0FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF7a/structure/6w37_Structural_Epitopes_8A.pse, 6w37_Structural_Epitopes_8A, -1, pse
set grid_mode, 1
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF7a/structure/6w37_combined.pse, 6w37_Normalized_Unique_Var_Count or 6w37_Normalized_Var_Count or 6w37_Normalized_Highest_Freq_Var_Count or 6w37_Inverse_ET or 6w37_Rescaled_EA_Highest_Freq or 6w37_Normalized_Atom_SA or 6w37_Linear_Epitopes or 6w37_Structural_Epitopes_3A or 6w37_Structural_Epitopes_4A or 6w37_Structural_Epitopes_5A or 6w37_Structural_Epitopes_6A or 6w37_Structural_Epitopes_7A or 6w37_Structural_Epitopes_7.5A or 6w37_Structural_Epitopes_8A, -1, pse
delete all