load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6lvn.pdb, 6lvn_Normalized_Unique_Var_Count
select to_keep, 6lvn_Normalized_Unique_Var_Count
select to_remove, 6lvn_Normalized_Unique_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6lvn_Normalized_Unique_Var_Count
color white, target_chain
delete target_chain
select curr_residues, 6lvn_Normalized_Unique_Var_Count and resi 2+3+4+7+12+15+18+34
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Unique_Var_Count and resi 5+9+10+13+14+17+21+22+24+25+27+28+29+32+33
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Unique_Var_Count and resi 20
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Unique_Var_Count and resi 35
color 0xFF0000, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6lvn_Normalized_Unique_Var_Count.pse, 6lvn_Normalized_Unique_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6lvn.pdb, 6lvn_Normalized_Var_Count
select to_keep, 6lvn_Normalized_Var_Count
select to_remove, 6lvn_Normalized_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6lvn_Normalized_Var_Count
color white, target_chain
delete target_chain
select curr_residues, 6lvn_Normalized_Var_Count and resi 2+3+5+7+12+15+22
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Var_Count and resi 4
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Var_Count and resi 9
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Var_Count and resi 10
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Var_Count and resi 13+14+17+21+25+27+28+29+32
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Var_Count and resi 18+34
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Var_Count and resi 20
color 0x004DFF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Var_Count and resi 24
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Var_Count and resi 33
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Var_Count and resi 35
color 0x5100FF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6lvn_Normalized_Var_Count.pse, 6lvn_Normalized_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6lvn.pdb, 6lvn_Normalized_Highest_Freq_Var_Count
select to_keep, 6lvn_Normalized_Highest_Freq_Var_Count
select to_remove, 6lvn_Normalized_Highest_Freq_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6lvn_Normalized_Highest_Freq_Var_Count
color white, target_chain
delete target_chain
select curr_residues, 6lvn_Normalized_Highest_Freq_Var_Count and resi 2+3+12+13+14+17+21+25+27+28+29+32
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Highest_Freq_Var_Count and resi 4
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Highest_Freq_Var_Count and resi 5+7+15+22+34
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Highest_Freq_Var_Count and resi 9
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Highest_Freq_Var_Count and resi 10
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Highest_Freq_Var_Count and resi 18
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Highest_Freq_Var_Count and resi 20
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Highest_Freq_Var_Count and resi 24
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Highest_Freq_Var_Count and resi 33
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Highest_Freq_Var_Count and resi 35
color 0x8E00FF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6lvn_Normalized_Highest_Freq_Var_Count.pse, 6lvn_Normalized_Highest_Freq_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6lvn.pdb, 6lvn_Inverse_ET
select to_keep, 6lvn_Inverse_ET
select to_remove, 6lvn_Inverse_ET and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6lvn_Inverse_ET
color white, target_chain
delete target_chain
select curr_residues, 6lvn_Inverse_ET and resi 2
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 3+16
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 4
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 5
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 6+31
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 7
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 8
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 9
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 10+23+34
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 11
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 12
color 0x8EFF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 13
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 14+17
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 15
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 18
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 19
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 20+25
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 21
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 22
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 24
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 26+27+33
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 28
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 29
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 30+35
color 0x6AFF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Inverse_ET and resi 32
color 0xFFE800, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6lvn_Inverse_ET.pse, 6lvn_Inverse_ET, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6lvn.pdb, 6lvn_Rescaled_EA_Highest_Freq
select to_keep, 6lvn_Rescaled_EA_Highest_Freq
select to_remove, 6lvn_Rescaled_EA_Highest_Freq and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6lvn_Rescaled_EA_Highest_Freq
color white, target_chain
delete target_chain
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 2
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 3
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 4
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 5
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 7
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 9
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 10
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 12
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 13
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 14
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 15
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 17
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 18
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 20
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 21
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 22
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 24
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 25
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 27
color 0x8EFF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 28
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 29
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 32
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 33
color 0x2CFF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 34
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Rescaled_EA_Highest_Freq and resi 35
color 0x00E0FF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6lvn_Rescaled_EA_Highest_Freq.pse, 6lvn_Rescaled_EA_Highest_Freq, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6lvn.pdb, 6lvn_Normalized_Atom_SA
select to_keep, 6lvn_Normalized_Atom_SA
select to_remove, 6lvn_Normalized_Atom_SA and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6lvn_Normalized_Atom_SA
color white, target_chain
delete target_chain
select curr_residues, 6lvn_Normalized_Atom_SA and resi 2+20
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 2+5+7+9+10+11+12+15+17+19+21+23+25+26+27+29+33
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 2
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 2+32
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 2
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 2
color 0x76FF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 3+6+14+27+29+30
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 3+13+19+20
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 3+28
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 3+33
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 4+18
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 4
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 4+6+11+13+15+17+25+27+32+34+35
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 5+6+8+22+25
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 5+8+12+13+14+16+18+19+20+22+23+24+25+26+29+30+31+32+33
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 5+29
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 5+25+35
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 5+9
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 6+9+10+33
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 6+15+34
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 6+15
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 6+31
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 7+30
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 7+30
color 0x82FF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 8+21+24
color 0x004DFF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 8
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 9+14+24+26+34
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 9+22+31+32+35
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 10+24
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 10+21
color 0x00FF04, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 10
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 11+14+17+28
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 11+17+24
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 12+34
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 12+13+16
color 0x2CFF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 12
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 13
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 13+24+25
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 14+16
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 14+32+35
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 14+23
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 15
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 15
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 16
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 17+21+28
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 18+21+28+35
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 18+26+34
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 18
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 18
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 18+33+35
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 18
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 19+27
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 19
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 19+30
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 20+23
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 20
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 21
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 22+27+29
color 0x45FF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 23+33
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 24
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 24
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 25+34
color 0x6AFF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 26
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 26
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 27
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 28
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 31
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 32
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 33
color 0xFF1800, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 34
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 35
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 6lvn_Normalized_Atom_SA and resi 35
color 0x008AFF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6lvn_Normalized_Atom_SA.pse, 6lvn_Normalized_Atom_SA, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6lvn.pdb, 6lvn_Linear_Epitopes
select to_keep, 6lvn_Linear_Epitopes
select to_remove, 6lvn_Linear_Epitopes and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6lvn_Linear_Epitopes
color white, target_chain
delete target_chain
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6lvn_Linear_Epitopes.pse, 6lvn_Linear_Epitopes, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6lvn.pdb, 6lvn_Structural_Epitopes_3A
select to_keep, 6lvn_Structural_Epitopes_3A
select to_remove, 6lvn_Structural_Epitopes_3A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6lvn_Structural_Epitopes_3A
color white, target_chain
delete target_chain
select curr_residues, 6lvn_Structural_Epitopes_3A and resi 19
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_3A and resi 23
color 0xFFC300, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6lvn_Structural_Epitopes_3A.pse, 6lvn_Structural_Epitopes_3A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6lvn.pdb, 6lvn_Structural_Epitopes_4A
select to_keep, 6lvn_Structural_Epitopes_4A
select to_remove, 6lvn_Structural_Epitopes_4A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6lvn_Structural_Epitopes_4A
color white, target_chain
delete target_chain
select curr_residues, 6lvn_Structural_Epitopes_4A and resi 6
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_4A and resi 8
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_4A and resi 19
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_4A and resi 23
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_4A and resi 26
color 0xFF5500, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6lvn_Structural_Epitopes_4A.pse, 6lvn_Structural_Epitopes_4A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6lvn.pdb, 6lvn_Structural_Epitopes_5A
select to_keep, 6lvn_Structural_Epitopes_5A
select to_remove, 6lvn_Structural_Epitopes_5A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6lvn_Structural_Epitopes_5A
color white, target_chain
delete target_chain
select curr_residues, 6lvn_Structural_Epitopes_5A and resi 6
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_5A and resi 8
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_5A and resi 19
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_5A and resi 23
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_5A and resi 26
color 0xFF5500, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6lvn_Structural_Epitopes_5A.pse, 6lvn_Structural_Epitopes_5A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6lvn.pdb, 6lvn_Structural_Epitopes_6A
select to_keep, 6lvn_Structural_Epitopes_6A
select to_remove, 6lvn_Structural_Epitopes_6A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6lvn_Structural_Epitopes_6A
color white, target_chain
delete target_chain
select curr_residues, 6lvn_Structural_Epitopes_6A and resi 6
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_6A and resi 8
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_6A and resi 19
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_6A and resi 23
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_6A and resi 26
color 0xFF5500, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6lvn_Structural_Epitopes_6A.pse, 6lvn_Structural_Epitopes_6A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6lvn.pdb, 6lvn_Structural_Epitopes_7A
select to_keep, 6lvn_Structural_Epitopes_7A
select to_remove, 6lvn_Structural_Epitopes_7A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6lvn_Structural_Epitopes_7A
color white, target_chain
delete target_chain
select curr_residues, 6lvn_Structural_Epitopes_7A and resi 6+31
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_7A and resi 8
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_7A and resi 19
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_7A and resi 23
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_7A and resi 26
color 0xFF5500, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6lvn_Structural_Epitopes_7A.pse, 6lvn_Structural_Epitopes_7A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6lvn.pdb, 6lvn_Structural_Epitopes_7.5A
select to_keep, 6lvn_Structural_Epitopes_7.5A
select to_remove, 6lvn_Structural_Epitopes_7.5A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6lvn_Structural_Epitopes_7.5A
color white, target_chain
delete target_chain
select curr_residues, 6lvn_Structural_Epitopes_7.5A and resi 6+31
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_7.5A and resi 8
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_7.5A and resi 19
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_7.5A and resi 23
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_7.5A and resi 26
color 0xFF5500, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6lvn_Structural_Epitopes_7.5A.pse, 6lvn_Structural_Epitopes_7.5A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6lvn.pdb, 6lvn_Structural_Epitopes_8A
select to_keep, 6lvn_Structural_Epitopes_8A
select to_remove, 6lvn_Structural_Epitopes_8A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6lvn_Structural_Epitopes_8A
color white, target_chain
delete target_chain
select curr_residues, 6lvn_Structural_Epitopes_8A and resi 6+31
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_8A and resi 8
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_8A and resi 19
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_8A and resi 23
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6lvn_Structural_Epitopes_8A and resi 26
color 0xFF5500, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6lvn_Structural_Epitopes_8A.pse, 6lvn_Structural_Epitopes_8A, -1, pse
set grid_mode, 1
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6lvn_combined.pse, 6lvn_Normalized_Unique_Var_Count or 6lvn_Normalized_Var_Count or 6lvn_Normalized_Highest_Freq_Var_Count or 6lvn_Inverse_ET or 6lvn_Rescaled_EA_Highest_Freq or 6lvn_Normalized_Atom_SA or 6lvn_Linear_Epitopes or 6lvn_Structural_Epitopes_3A or 6lvn_Structural_Epitopes_4A or 6lvn_Structural_Epitopes_5A or 6lvn_Structural_Epitopes_6A or 6lvn_Structural_Epitopes_7A or 6lvn_Structural_Epitopes_7.5A or 6lvn_Structural_Epitopes_8A, -1, pse
delete all