load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m0j.pdb, 6m0j_Normalized_Unique_Var_Count
select target_chain, 6m0j_Normalized_Unique_Var_Count and chain E
color white, 6m0j_Normalized_Unique_Var_Count
delete target_chain
select curr_residues, 6m0j_Normalized_Unique_Var_Count and chain E and resi 337+344+346+348+378+382+384+403+408+411+417+427+444+446+452+458+459+468+469+471+476+479+485+494+501+519+520+521+522
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Unique_Var_Count and chain E and resi 338+339+340+341+345+352+357+359+364+365+367+368+370+372+373+379+385+393+395+402+407+413+415+418+432+434+435+439+440+441+445+450+453+455+456+457+460+463+470+472+475+481+482+486+493+499+503+505+508+509+510+514+516+518+523
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Unique_Var_Count and chain E and resi 354+414+483+490
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Unique_Var_Count and chain E and resi 477
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Unique_Var_Count and chain E and resi 478+484
color 0xFFE800, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m0j_Normalized_Unique_Var_Count.pse, 6m0j_Normalized_Unique_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m0j.pdb, 6m0j_Normalized_Var_Count
select target_chain, 6m0j_Normalized_Var_Count and chain E
color white, 6m0j_Normalized_Var_Count
delete target_chain
select curr_residues, 6m0j_Normalized_Var_Count and chain E and resi 341+344+367+384+478+483+501+520
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Var_Count and chain E and resi 439
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Var_Count and chain E and resi 477
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Var_Count and chain E and resi 522
color 0xA700FF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m0j_Normalized_Var_Count.pse, 6m0j_Normalized_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m0j.pdb, 6m0j_Normalized_Highest_Freq_Var_Count
select target_chain, 6m0j_Normalized_Highest_Freq_Var_Count and chain E
color white, 6m0j_Normalized_Highest_Freq_Var_Count
delete target_chain
select curr_residues, 6m0j_Normalized_Highest_Freq_Var_Count and chain E and resi 341+344+367+483+501+520+522
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Highest_Freq_Var_Count and chain E and resi 439
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Highest_Freq_Var_Count and chain E and resi 477
color 0xFF0000, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m0j_Normalized_Highest_Freq_Var_Count.pse, 6m0j_Normalized_Highest_Freq_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m0j.pdb, 6m0j_Inverse_ET
select target_chain, 6m0j_Inverse_ET and chain E
color white, 6m0j_Inverse_ET
delete target_chain
select curr_residues, 6m0j_Inverse_ET and chain E and resi 333+440+443+456
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 334+480+482
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 335+471
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 336+347+363+429
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 337
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 338
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 339+493+500
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 340+445+450+459+462+478+489
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 341+389+394+401+438
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 342
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 343+441+468+473
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 344+367+413+454+463
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 345
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 346+376+378+420+466
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 348
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 349+496+497
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 350+415
color 0x51FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 351+362+371
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 352
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 353+392+400
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 354+453+487+502
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 355+398+432
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 356+455+458+474+486+503
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 357+411
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 358+421
color 0x8EFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 359+393+510
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 360+506+507+508
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 361+391+422
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 364+431+513
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 365+381+418
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 366+447+448+469+477+479
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 368+520
color 0x00FF04, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 369+461
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 370+396+511
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 372+382
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 373+407+467
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 374+390
color 0x82FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 375
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 377
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 379+423
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 380+410+439+465+522
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 383
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 384
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 385+399+442+505
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 386+428+519
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 387+395+526
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 388+403
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 397
color 0x14FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 402+405+427+457
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 404+485+488+498
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 406+492+516
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 408+409+414
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 412
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 416+425+426
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 417
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 419+495
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 424
color 0x00FF4D, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 430+434
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 433
color 0x45FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 435
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 436+518+523
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 437
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 444+472
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 446+451+470
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 449+481+494
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 452+491
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 460
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 464+521
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 475+476+483
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 484+499+501+504
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 490
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 509
color 0x76FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 512+514
color 0x39FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 515+517
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Inverse_ET and chain E and resi 524+525
color 0xFF6E00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m0j_Inverse_ET.pse, 6m0j_Inverse_ET, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m0j.pdb, 6m0j_Rescaled_EA_Highest_Freq
select target_chain, 6m0j_Rescaled_EA_Highest_Freq and chain E
color white, 6m0j_Rescaled_EA_Highest_Freq
delete target_chain
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 337
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 338
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 339
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 340
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 341
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 344
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 345
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 346
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 348
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 352
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 354
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 357
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 359
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 364
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 365
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 367
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 368
color 0x8EFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 370
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 372
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 373
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 378
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 379
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 382
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 384
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 385
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 393
color 0x00FF4D, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 395
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 402
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 403
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 407
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 408
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 411
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 413
color 0x76FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 414
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 415
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 417
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 418
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 427
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 432
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 434
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 435
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 439
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 440
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 441
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 444
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 445
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 446
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 450
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 452
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 453
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 455
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 456
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 457
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 458
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 459
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 460
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 463
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 468
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 469
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 470
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 471
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 472
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 475
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 476
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 477
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 478
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 479
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 481
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 482
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 483
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 484
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 485
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 486
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 490
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 493
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 494
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 499
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 501
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 503
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 505
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 508
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 509
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 510
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 514
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 516
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 518
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 519
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 520
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 521
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 522
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Rescaled_EA_Highest_Freq and chain E and resi 523
color 0x00FF72, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m0j_Rescaled_EA_Highest_Freq.pse, 6m0j_Rescaled_EA_Highest_Freq, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m0j.pdb, 6m0j_Normalized_Atom_SA
select target_chain, 6m0j_Normalized_Atom_SA and chain E
color white, 6m0j_Normalized_Atom_SA
delete target_chain
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 333+390+481+484
color 0x45FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 333+334+343+360+361+364+365+370+371+373+379+382+388+389+393+396+405+407+408+440+446+454+466+480+481+488+492+496+501+518
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 333+342+347+349+354+359+361+365+374+375+377+378+382+384+387+392+393+403+407+409+413+414+416+425+430+446+450+452+453+456+457+458+462+467+469+472+474+478+483+484+487+490+505+515+521+524
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 333+362+378+408+444+458+469+500
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 333+348+378+392+447+490
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 333
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 333+389+473+519
color 0x39FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 334+335+338+341+342+343+351+353+357+358+362+363+365+366+367+369+370+372+374+375+377+379+385+393+403+405+410+411+414+417+419+420+422+425+427+428+429+431+436+439+443+445+450+456+457+459+464+467+473+478+480+485+487+490+495+497+500+501+503+505+508+509+510+514+515+517+518+520+521+522+523+525
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 334+357+390+427+463+481+489+505+517+522
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 334+369+483
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 334+356+360+458+519
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 335+340+359+383+392+403+412+486+499
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 335+340+347+355+371+375+377+403+427+430+459+472+473+477+480+489+501
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 335
color 0xFF1800, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 335+339+452+462+470+474+503+518
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 336+337+355+406+436+449+471+478+479+490+499+506+516+517
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 337+377+391+396+407+424+428+430+440+444+448+457+464+467+482+498+500+520
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 337+340+357+359+366+368+381+386+412+443
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 337+346+352+362+373+408+458+469+476+478+490+521
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 338+341+347+354+355+356+361+364+365+368+369+372+374+380+386+390+397+404+412+416+417+421+423+424+426+427+428+429+433+451+453+465+466+470+471+473+475+484+488+493+495+497+498+499+515+517+519+523
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 338+348+382+386+388+391+394+396+411+426+450+471+504+506+522
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 338+345+349+354+357+367+370+381+382+383+386+405+406+408+420+427+428+457+471+473+474+481+484+486+493+508+517+523
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 339+369+386+426+428+437+448+456+460+494+496+504
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 339+340+348+355+360+369+383+388+389+390+407+415+432+437+439+442+444+450+457+465+468+470+477+481+483+485+493+498+500+519+520
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 339+344+345+355+359+361+373+379+380+385+390+394+404+408+412+415+448+449+460+467+468+472+480+493+501+505+516+519+526
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 340+346+356+430+458+525
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 340+341+342+343+346+351+353+356+367+368+369+380+390+391+392+396+433+436+437+440+441+451+456+458+465+468+486+490+491+492+495+505+508+513+516+519+520
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 340+460
color 0x51FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 341+344+356+357+374+377+449+463+471+485+486+495+503+523
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 342+346+353+360+365+366+368+375+380+382+388+389+405+409+410+417+429+436+437+439+445+449+450+453+460+466+472+476+489+494+501+509+518
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 342+362+372+399+452+469+498+502+514
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 343+370+427+462+489+523
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 343+345+376+385+436+450+461+490
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 343+357+408+503
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 343+385+386
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 344+360+373+405+408+449+477+486+494+505+525
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 345+360+367+378+417+446+455+481+505+522
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 345+444+500
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 345+440+449+483
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 346+375+471+485+498+518
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 346+354+415
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 346+470+475
color 0x14FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 349+445+449+466+467+472+481+503+519
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 351+381+421+477+479
color 0x00FF04, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 352+364+371+487+526
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 354+355+466+519
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 355+373+378+379
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 357+370+374+414+489+500
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 360+371+389+417+424+441+456+463+479
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 364+380+416+427+444+463+487
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 364+389+456+458+464+465+474+484+515
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 366+369+370+383+385+413+437+501+508
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 367
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 369+376+380+404+428+455+460+464
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 370+413+458+481+526
color 0x00FF4D, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 372+389+477
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 372
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 374+384+408+429+440+449+466+468+470+476+493+496+505
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 375+382+403+408+440+465+521
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 378+381+385+415+437+460+475+479+486
color 0x004DFF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 380+405+453+482+486+516+517+519
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 386
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 391
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 396+474+499
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 409+445+457
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 414+486
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 415+430+493
color 0x2CFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 417+420+450+459+484+521
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 427+428+445
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 428+459+462+482+486
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 439+449+464+468+490
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 440+441+446+484+502
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 441
color 0x82FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 445+520
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 462
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 466+518
color 0x6AFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 468
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 471+493
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 478
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 505
color 0x8EFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 517
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 519
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Normalized_Atom_SA and chain E and resi 521
color 0x00FF35, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m0j_Normalized_Atom_SA.pse, 6m0j_Normalized_Atom_SA, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m0j.pdb, 6m0j_Linear_Epitopes
select target_chain, 6m0j_Linear_Epitopes and chain E
color white, 6m0j_Linear_Epitopes
delete target_chain
select curr_residues, 6m0j_Linear_Epitopes and chain E and resi 391+422
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Linear_Epitopes and chain E and resi 392
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6m0j_Linear_Epitopes and chain E and resi 423
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6m0j_Linear_Epitopes and chain E and resi 425+426
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Linear_Epitopes and chain E and resi 524+525
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Linear_Epitopes and chain E and resi 526
color 0xFFDC00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m0j_Linear_Epitopes.pse, 6m0j_Linear_Epitopes, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m0j.pdb, 6m0j_Structural_Epitopes_3A
select target_chain, 6m0j_Structural_Epitopes_3A and chain E
color white, 6m0j_Structural_Epitopes_3A
delete target_chain
select curr_residues, 6m0j_Structural_Epitopes_3A and chain E and resi 355+398
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_3A and chain E and resi 391
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_3A and chain E and resi 425+426
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_3A and chain E and resi 524+525
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_3A and chain E and resi 526
color 0xFFDC00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m0j_Structural_Epitopes_3A.pse, 6m0j_Structural_Epitopes_3A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m0j.pdb, 6m0j_Structural_Epitopes_4A
select target_chain, 6m0j_Structural_Epitopes_4A and chain E
color white, 6m0j_Structural_Epitopes_4A
delete target_chain
select curr_residues, 6m0j_Structural_Epitopes_4A and chain E and resi 336+429
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_4A and chain E and resi 353+392
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_4A and chain E and resi 355+398
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_4A and chain E and resi 361+391
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_4A and chain E and resi 425+426
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_4A and chain E and resi 431
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_4A and chain E and resi 524+525
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_4A and chain E and resi 526
color 0xFFDC00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m0j_Structural_Epitopes_4A.pse, 6m0j_Structural_Epitopes_4A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m0j.pdb, 6m0j_Structural_Epitopes_5A
select target_chain, 6m0j_Structural_Epitopes_5A and chain E
color white, 6m0j_Structural_Epitopes_5A
delete target_chain
select curr_residues, 6m0j_Structural_Epitopes_5A and chain E and resi 336+363+429
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_5A and chain E and resi 353+392
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_5A and chain E and resi 355+398
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_5A and chain E and resi 361+391+422
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_5A and chain E and resi 381
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_5A and chain E and resi 383
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_5A and chain E and resi 423
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_5A and chain E and resi 425+426
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_5A and chain E and resi 431
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_5A and chain E and resi 524+525
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_5A and chain E and resi 526
color 0xFFDC00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m0j_Structural_Epitopes_5A.pse, 6m0j_Structural_Epitopes_5A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m0j.pdb, 6m0j_Structural_Epitopes_6A
select target_chain, 6m0j_Structural_Epitopes_6A and chain E
color white, 6m0j_Structural_Epitopes_6A
delete target_chain
select curr_residues, 6m0j_Structural_Epitopes_6A and chain E and resi 336+363+429
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_6A and chain E and resi 353+392
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_6A and chain E and resi 355+398
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_6A and chain E and resi 361+391+422
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_6A and chain E and resi 377
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_6A and chain E and resi 381
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_6A and chain E and resi 383
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_6A and chain E and resi 387+526
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_6A and chain E and resi 423
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_6A and chain E and resi 425+426
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_6A and chain E and resi 431+513
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_6A and chain E and resi 524+525
color 0xFF6E00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m0j_Structural_Epitopes_6A.pse, 6m0j_Structural_Epitopes_6A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m0j.pdb, 6m0j_Structural_Epitopes_7A
select target_chain, 6m0j_Structural_Epitopes_7A and chain E
color white, 6m0j_Structural_Epitopes_7A
delete target_chain
select curr_residues, 6m0j_Structural_Epitopes_7A and chain E and resi 336+363+429
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_7A and chain E and resi 353+392
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_7A and chain E and resi 355+398
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_7A and chain E and resi 361+391+422
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_7A and chain E and resi 377
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_7A and chain E and resi 381
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_7A and chain E and resi 383
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_7A and chain E and resi 387+526
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_7A and chain E and resi 423
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_7A and chain E and resi 425+426
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_7A and chain E and resi 431+513
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_7A and chain E and resi 524+525
color 0xFF6E00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m0j_Structural_Epitopes_7A.pse, 6m0j_Structural_Epitopes_7A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m0j.pdb, 6m0j_Structural_Epitopes_7.5A
select target_chain, 6m0j_Structural_Epitopes_7.5A and chain E
color white, 6m0j_Structural_Epitopes_7.5A
delete target_chain
select curr_residues, 6m0j_Structural_Epitopes_7.5A and chain E and resi 336+363+429
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_7.5A and chain E and resi 353+392
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_7.5A and chain E and resi 355+398
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_7.5A and chain E and resi 361+391+422
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_7.5A and chain E and resi 377
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_7.5A and chain E and resi 381
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_7.5A and chain E and resi 383
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_7.5A and chain E and resi 387+526
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_7.5A and chain E and resi 423
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_7.5A and chain E and resi 425+426
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_7.5A and chain E and resi 431+513
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_7.5A and chain E and resi 524+525
color 0xFF6E00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m0j_Structural_Epitopes_7.5A.pse, 6m0j_Structural_Epitopes_7.5A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m0j.pdb, 6m0j_Structural_Epitopes_8A
select target_chain, 6m0j_Structural_Epitopes_8A and chain E
color white, 6m0j_Structural_Epitopes_8A
delete target_chain
select curr_residues, 6m0j_Structural_Epitopes_8A and chain E and resi 336+363+429
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_8A and chain E and resi 353+392
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_8A and chain E and resi 355+398
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_8A and chain E and resi 361+391+422
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_8A and chain E and resi 377
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_8A and chain E and resi 381
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_8A and chain E and resi 383
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_8A and chain E and resi 387+526
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_8A and chain E and resi 416+425+426
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_8A and chain E and resi 423
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_8A and chain E and resi 431+513
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 6m0j_Structural_Epitopes_8A and chain E and resi 524+525
color 0xFF6E00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m0j_Structural_Epitopes_8A.pse, 6m0j_Structural_Epitopes_8A, -1, pse
set grid_mode, 1
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m0j_combined.pse, 6m0j_Normalized_Unique_Var_Count or 6m0j_Normalized_Var_Count or 6m0j_Normalized_Highest_Freq_Var_Count or 6m0j_Inverse_ET or 6m0j_Rescaled_EA_Highest_Freq or 6m0j_Normalized_Atom_SA or 6m0j_Linear_Epitopes or 6m0j_Structural_Epitopes_3A or 6m0j_Structural_Epitopes_4A or 6m0j_Structural_Epitopes_5A or 6m0j_Structural_Epitopes_6A or 6m0j_Structural_Epitopes_7A or 6m0j_Structural_Epitopes_7.5A or 6m0j_Structural_Epitopes_8A, -1, pse
delete all