load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m1v_Corrected.pdb, 6m1v_Corrected_Normalized_Unique_Var_Count
select to_keep, 6m1v_Corrected_Normalized_Unique_Var_Count
select to_remove, 6m1v_Corrected_Normalized_Unique_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6m1v_Corrected_Normalized_Unique_Var_Count
color white, target_chain
delete target_chain
select curr_residues, 6m1v_Corrected_Normalized_Unique_Var_Count and resi 918+925+926+931+932+934+935+937+940+946+948+952+954+955+957+958+961+1172+1176+1177+1180+1181+1184+1188+1189+1191+1192+1194+1195+1196+1199+1200
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Unique_Var_Count and resi 922+924+929+930+938+939+943+963+1169+1170+1171+1174+1179+1182+1185+1201
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Unique_Var_Count and resi 936+941+942+950+1187
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Unique_Var_Count and resi 1202
color 0xFF0000, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m1v_Corrected_Normalized_Unique_Var_Count.pse, 6m1v_Corrected_Normalized_Unique_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m1v_Corrected.pdb, 6m1v_Corrected_Normalized_Var_Count
select to_keep, 6m1v_Corrected_Normalized_Var_Count
select to_remove, 6m1v_Corrected_Normalized_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6m1v_Corrected_Normalized_Var_Count
color white, target_chain
delete target_chain
select curr_residues, 6m1v_Corrected_Normalized_Var_Count and resi 922+1191
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Var_Count and resi 924+930+937+941+946+950+955+958+963+1174+1177+1182+1185+1201
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Var_Count and resi 929+938+1171+1200
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Var_Count and resi 936
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Var_Count and resi 939
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Var_Count and resi 940
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Var_Count and resi 942+1202
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Var_Count and resi 943
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Var_Count and resi 1176
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Var_Count and resi 1187
color 0x7600FF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m1v_Corrected_Normalized_Var_Count.pse, 6m1v_Corrected_Normalized_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m1v_Corrected.pdb, 6m1v_Corrected_Normalized_Highest_Freq_Var_Count
select to_keep, 6m1v_Corrected_Normalized_Highest_Freq_Var_Count
select to_remove, 6m1v_Corrected_Normalized_Highest_Freq_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6m1v_Corrected_Normalized_Highest_Freq_Var_Count
color white, target_chain
delete target_chain
select curr_residues, 6m1v_Corrected_Normalized_Highest_Freq_Var_Count and resi 922+1191
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Highest_Freq_Var_Count and resi 924+937+946+955+958+1177+1185+1201+1202
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Highest_Freq_Var_Count and resi 929+938+942+1171
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Highest_Freq_Var_Count and resi 936
color 0xFF1800, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Highest_Freq_Var_Count and resi 939
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Highest_Freq_Var_Count and resi 940+1187
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Highest_Freq_Var_Count and resi 943
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Highest_Freq_Var_Count and resi 1176
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Highest_Freq_Var_Count and resi 1200
color 0x9B00FF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m1v_Corrected_Normalized_Highest_Freq_Var_Count.pse, 6m1v_Corrected_Normalized_Highest_Freq_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m1v_Corrected.pdb, 6m1v_Corrected_Inverse_ET
select to_keep, 6m1v_Corrected_Inverse_ET
select to_remove, 6m1v_Corrected_Inverse_ET and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6m1v_Corrected_Inverse_ET
color white, target_chain
delete target_chain
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 917
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 918
color 0x82FF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 919+920+923+930+935+959+966+1193+1194+1200
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 921+1197+1202
color 0x6AFF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 922
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 924
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 925+951+1199
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 926+1179
color 0x8EFF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 927+928+944+949+953+956+962+1173+1198
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 929
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 931+1175
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 932
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 933
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 934+955
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 936+950
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 937+938+1172
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 939+940
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 941+947+965+1189
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 942+954
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 943+1185
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 945+1177+1190+1201
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 946+1180
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 948+1182
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 952
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 957+1191
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 958+963
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 960+1169
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 961
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 964
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 1170+1183
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 1171+1204+1205
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 1174
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 1176
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 1178
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 1181+1184
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 1186
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 1187+1192
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 1188
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 1195
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 1196
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Inverse_ET and resi 1203
color 0x0041FF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m1v_Corrected_Inverse_ET.pse, 6m1v_Corrected_Inverse_ET, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m1v_Corrected.pdb, 6m1v_Corrected_Rescaled_EA_Highest_Freq
select to_keep, 6m1v_Corrected_Rescaled_EA_Highest_Freq
select to_remove, 6m1v_Corrected_Rescaled_EA_Highest_Freq and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6m1v_Corrected_Rescaled_EA_Highest_Freq
color white, target_chain
delete target_chain
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 918
color 0x6AFF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 922
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 924
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 925
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 926
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 929
color 0x2CFF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 930
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 931
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 932
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 934
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 935
color 0x51FF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 936
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 937
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 938
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 939
color 0x39FF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 940
color 0x39FF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 941
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 942
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 943
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 946
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 948
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 950
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 952
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 954
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 955
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 957
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 958
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 961
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 963
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1169
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1170
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1171
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1172
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1174
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1176
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1177
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1179
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1180
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1181
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1182
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1184
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1185
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1187
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1188
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1189
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1191
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1192
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1194
color 0x8EFF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1195
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1196
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1199
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1200
color 0x2CFF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1201
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Rescaled_EA_Highest_Freq and resi 1202
color 0x00E0FF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m1v_Corrected_Rescaled_EA_Highest_Freq.pse, 6m1v_Corrected_Rescaled_EA_Highest_Freq, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m1v_Corrected.pdb, 6m1v_Corrected_Normalized_Atom_SA
select to_keep, 6m1v_Corrected_Normalized_Atom_SA
select to_remove, 6m1v_Corrected_Normalized_Atom_SA and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6m1v_Corrected_Normalized_Atom_SA
color white, target_chain
delete target_chain
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 917+1195+1202
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 917+921+960+1173+1179+1191+1198
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 917+918+920+925+940+944+948+959+962+1181+1184+1187+1191+1192+1193+1194+1202
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 917+934+947+1192
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 917+950+957+1173+1194
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 917+920+938+942+943+952+962+964+1171+1181+1182+1197+1199+1204+1205
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 917+926+927+936+954+957+965+1169+1173+1175+1180+1181+1185+1188+1190+1195+1196+1199+1201+1204
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 917+922
color 0xFF1800, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 918+919+929+953+1171+1174+1175+1177+1178+1184+1186+1190+1195+1199+1205
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 918+920+923+929+935+936+944+949+956+961+1170+1172+1176+1182+1203+1205
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 918+1178+1205
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 918+919+925+1188
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 918+1170+1188
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 918+919+922+923+928+930+933+935+941+942+944+945+946+948+949+950+954+958+959+960+962+964+1173+1174+1177+1179+1180+1182+1183+1184+1185+1188+1189+1191+1192+1193+1194+1195+1198+1202
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 919+934+953+1180+1181+1188
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 919+1178
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 919+950+1197+1203
color 0x00FF04, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 920+922+923+930+932+937+941+949+951+952+954+955+1177+1188+1200+1202+1205
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 920+921+1180+1189
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 920+926+927+929+947+949+960+1176+1177+1189+1190+1192+1200+1201
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 920+957+1172+1183+1187
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 920+962+1171+1172+1202
color 0x39FF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 921+932+943+954+955+1184+1202
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 922+943
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 923+931+1172+1200
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 923+944
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 923+966+1201
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 924+926+933+935+946+956+959+960+966+1173+1176+1191+1198
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 925+1204
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 925+935+961+965+1188+1196
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 925+951+959+1194+1195
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 926+947+1184+1187+1194
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 926+964+1170+1177+1178+1185+1191
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 926
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 926+954+955+1173+1191+1204+1205
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 927+939+940+958+1174+1178+1200
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 927+928+929+933+935+936+937+939+940+942+943+947+948+953+955+956+957+958+959+960+961+962+963+965+966+1169+1184+1186+1187+1193+1199+1203+1204
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 927+933+964
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 927+939+1187+1189+1191
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 927+928+933+960+963+1199
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 928+935+954+960+963+1174+1198
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 928+937+1175+1198+1204+1205
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 929+943+948+949+955+958+1185+1197+1202
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 929+937+1169+1185+1187+1194
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 929+1178+1195
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 930+1169+1170
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 933+1180+1192+1195+1199
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 933+947+1172+1198+1201
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 933
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 934
color 0x45FF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 936+1181
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 936+940
color 0x76FF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 936
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 937+951+955+1186+1196
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 938+941+957+966+1176+1204
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 939+940
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 941
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 945+947+953+965+1185+1202
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 945+1201
color 0x82FF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 946+1200+1201
color 0x004DFF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 947+966+1205
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 948+952+958+1182
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 948+1173
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 950+952
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 950+1170+1179
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 957
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 959
color 0x8EFF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 961
color 0x2CFF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 962+965
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 963+1196
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 964+1180+1197
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 964+1199
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 964
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 965+1177+1184+1195
color 0x14FF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 965+1181
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 966+1182+1192
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 1169
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 1171+1201
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 1175+1193+1204
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 1175
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 1176+1182+1205
color 0x00FF4D, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 1176+1185
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 1181
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 1181
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 1185
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 1191
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Normalized_Atom_SA and resi 1204
color 0xE4FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m1v_Corrected_Normalized_Atom_SA.pse, 6m1v_Corrected_Normalized_Atom_SA, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m1v_Corrected.pdb, 6m1v_Corrected_Linear_Epitopes
select to_keep, 6m1v_Corrected_Linear_Epitopes
select to_remove, 6m1v_Corrected_Linear_Epitopes and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6m1v_Corrected_Linear_Epitopes
color white, target_chain
delete target_chain
select curr_residues, 6m1v_Corrected_Linear_Epitopes and resi 919+920+966
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Linear_Epitopes and resi 927+928+944
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Linear_Epitopes and resi 945
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Linear_Epitopes and resi 965
color 0xFF9200, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m1v_Corrected_Linear_Epitopes.pse, 6m1v_Corrected_Linear_Epitopes, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m1v_Corrected.pdb, 6m1v_Corrected_Structural_Epitopes_3A
select to_keep, 6m1v_Corrected_Structural_Epitopes_3A
select to_remove, 6m1v_Corrected_Structural_Epitopes_3A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6m1v_Corrected_Structural_Epitopes_3A
color white, target_chain
delete target_chain
select curr_residues, 6m1v_Corrected_Structural_Epitopes_3A and resi 919+920+923+966
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_3A and resi 927+928+949+1198
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_3A and resi 945
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_3A and resi 965
color 0xFF9200, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m1v_Corrected_Structural_Epitopes_3A.pse, 6m1v_Corrected_Structural_Epitopes_3A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m1v_Corrected.pdb, 6m1v_Corrected_Structural_Epitopes_4A
select to_keep, 6m1v_Corrected_Structural_Epitopes_4A
select to_remove, 6m1v_Corrected_Structural_Epitopes_4A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6m1v_Corrected_Structural_Epitopes_4A
color white, target_chain
delete target_chain
select curr_residues, 6m1v_Corrected_Structural_Epitopes_4A and resi 919+920+923+959+966+1193
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_4A and resi 927+928+944+949+953+956+1173+1198
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_4A and resi 945+1190
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_4A and resi 947+965
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_4A and resi 951
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_4A and resi 1175
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_4A and resi 1186
color 0xFF6E00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m1v_Corrected_Structural_Epitopes_4A.pse, 6m1v_Corrected_Structural_Epitopes_4A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m1v_Corrected.pdb, 6m1v_Corrected_Structural_Epitopes_5A
select to_keep, 6m1v_Corrected_Structural_Epitopes_5A
select to_remove, 6m1v_Corrected_Structural_Epitopes_5A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6m1v_Corrected_Structural_Epitopes_5A
color white, target_chain
delete target_chain
select curr_residues, 6m1v_Corrected_Structural_Epitopes_5A and resi 919+920+923+959+966+1193
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_5A and resi 927+928+944+949+953+956+962+1173+1198
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_5A and resi 945+1190
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_5A and resi 947+965
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_5A and resi 951
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_5A and resi 1175
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_5A and resi 1186
color 0xFF6E00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m1v_Corrected_Structural_Epitopes_5A.pse, 6m1v_Corrected_Structural_Epitopes_5A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m1v_Corrected.pdb, 6m1v_Corrected_Structural_Epitopes_6A
select to_keep, 6m1v_Corrected_Structural_Epitopes_6A
select to_remove, 6m1v_Corrected_Structural_Epitopes_6A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6m1v_Corrected_Structural_Epitopes_6A
color white, target_chain
delete target_chain
select curr_residues, 6m1v_Corrected_Structural_Epitopes_6A and resi 919+920+923+959+966+1193
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_6A and resi 927+928+944+949+953+956+962+1173+1198
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_6A and resi 945+1190
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_6A and resi 947+965
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_6A and resi 951
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_6A and resi 1175
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_6A and resi 1186
color 0xFF6E00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m1v_Corrected_Structural_Epitopes_6A.pse, 6m1v_Corrected_Structural_Epitopes_6A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m1v_Corrected.pdb, 6m1v_Corrected_Structural_Epitopes_7A
select to_keep, 6m1v_Corrected_Structural_Epitopes_7A
select to_remove, 6m1v_Corrected_Structural_Epitopes_7A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6m1v_Corrected_Structural_Epitopes_7A
color white, target_chain
delete target_chain
select curr_residues, 6m1v_Corrected_Structural_Epitopes_7A and resi 919+920+923+959+966+1193
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_7A and resi 927+928+944+949+953+956+962+1173+1198
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_7A and resi 945+1190
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_7A and resi 947+965
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_7A and resi 951
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_7A and resi 1175
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_7A and resi 1186
color 0xFF6E00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m1v_Corrected_Structural_Epitopes_7A.pse, 6m1v_Corrected_Structural_Epitopes_7A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m1v_Corrected.pdb, 6m1v_Corrected_Structural_Epitopes_7.5A
select to_keep, 6m1v_Corrected_Structural_Epitopes_7.5A
select to_remove, 6m1v_Corrected_Structural_Epitopes_7.5A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6m1v_Corrected_Structural_Epitopes_7.5A
color white, target_chain
delete target_chain
select curr_residues, 6m1v_Corrected_Structural_Epitopes_7.5A and resi 919+920+923+959+966+1193
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_7.5A and resi 927+928+944+949+953+956+962+1173+1198
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_7.5A and resi 945+1190
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_7.5A and resi 947+965
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_7.5A and resi 951
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_7.5A and resi 1175
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_7.5A and resi 1186
color 0xFF6E00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m1v_Corrected_Structural_Epitopes_7.5A.pse, 6m1v_Corrected_Structural_Epitopes_7.5A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6m1v_Corrected.pdb, 6m1v_Corrected_Structural_Epitopes_8A
select to_keep, 6m1v_Corrected_Structural_Epitopes_8A
select to_remove, 6m1v_Corrected_Structural_Epitopes_8A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6m1v_Corrected_Structural_Epitopes_8A
color white, target_chain
delete target_chain
select curr_residues, 6m1v_Corrected_Structural_Epitopes_8A and resi 919+920+923+959+966+1193
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_8A and resi 927+928+944+949+953+956+962+1173+1198
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_8A and resi 945+1190
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_8A and resi 947+965
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_8A and resi 951
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_8A and resi 1175
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6m1v_Corrected_Structural_Epitopes_8A and resi 1186
color 0xFF6E00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m1v_Corrected_Structural_Epitopes_8A.pse, 6m1v_Corrected_Structural_Epitopes_8A, -1, pse
set grid_mode, 1
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_surfaceglycoprotein/structure/6m1v_Corrected_combined.pse, 6m1v_Corrected_Normalized_Unique_Var_Count or 6m1v_Corrected_Normalized_Var_Count or 6m1v_Corrected_Normalized_Highest_Freq_Var_Count or 6m1v_Corrected_Inverse_ET or 6m1v_Corrected_Rescaled_EA_Highest_Freq or 6m1v_Corrected_Normalized_Atom_SA or 6m1v_Corrected_Linear_Epitopes or 6m1v_Corrected_Structural_Epitopes_3A or 6m1v_Corrected_Structural_Epitopes_4A or 6m1v_Corrected_Structural_Epitopes_5A or 6m1v_Corrected_Structural_Epitopes_6A or 6m1v_Corrected_Structural_Epitopes_7A or 6m1v_Corrected_Structural_Epitopes_7.5A or 6m1v_Corrected_Structural_Epitopes_8A, -1, pse
delete all