load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w02.pdb, 6w02_Normalized_Unique_Var_Count
select to_keep, 6w02_Normalized_Unique_Var_Count
select to_remove, 6w02_Normalized_Unique_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w02_Normalized_Unique_Var_Count
color white, target_chain
delete target_chain
select curr_residues, 6w02_Normalized_Unique_Var_Count and resi 4+17+32+33+42+45+47+60+64+67+70+71+73+79+84+91+92+93+97+101+103+104+105+106+108+110+114+119+121+123+125+133+136+148+150+157+162+164
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Unique_Var_Count and resi 5+8+12+13+15+20+21+22+23+26+28+29+30+34+38+39+40+41+46+48+49+53+54+56+58+59+61+63+68+69+76+77+80+81+86+87+88+90+94+95+98+100+102+109+111+112+115+118+120+129+130+131+132+134+138+139+141+142+143+146+149+151+154+155+156+160+166+168
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Unique_Var_Count and resi 7+25+27+51+52+72+74+78+145+167
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Unique_Var_Count and resi 14+137
color 0xFF0000, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6w02_Normalized_Unique_Var_Count.pse, 6w02_Normalized_Unique_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w02.pdb, 6w02_Normalized_Var_Count
select to_keep, 6w02_Normalized_Var_Count
select to_remove, 6w02_Normalized_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w02_Normalized_Var_Count
color white, target_chain
delete target_chain
select curr_residues, 6w02_Normalized_Var_Count and resi 4+5+41+42+45+61+70+103+104+105+112+123+145+168
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 7+12+25+88+110+131+150
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 13+21+64+67+167
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 14
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 17+34+38+39+47+49+54+60+68+69+72+73+76+87+92+93+97+98+101+102+106+111+114+115+125+130+141+142+149+151+156+157+160+162+164
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 27
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 30+84+109
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 32+138
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 33
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 51
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 52+119+129+137+166
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 63+120
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 71
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 74
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 78
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 79
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 80+121
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 86+108
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 91
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 133
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 136
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 146
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 148
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Var_Count and resi 154
color 0x2000FF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6w02_Normalized_Var_Count.pse, 6w02_Normalized_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w02.pdb, 6w02_Normalized_Highest_Freq_Var_Count
select to_keep, 6w02_Normalized_Highest_Freq_Var_Count
select to_remove, 6w02_Normalized_Highest_Freq_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w02_Normalized_Highest_Freq_Var_Count
color white, target_chain
delete target_chain
select curr_residues, 6w02_Normalized_Highest_Freq_Var_Count and resi 4+17+34+38+39+45+47+49+54+68+69+76+87+92+93+97+98+102+103+104+105+111+115+123+125+130+141+142+145+149+151+156+160+162
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Highest_Freq_Var_Count and resi 5+41+42+61+70+84+112+168
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Highest_Freq_Var_Count and resi 7+25+30+52+64+109+137+150+167
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Highest_Freq_Var_Count and resi 12+67+79+88+110+131
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Highest_Freq_Var_Count and resi 13+21
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Highest_Freq_Var_Count and resi 14
color 0xFF1800, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Highest_Freq_Var_Count and resi 27
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Highest_Freq_Var_Count and resi 32+119+129+166
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Highest_Freq_Var_Count and resi 33+133
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Highest_Freq_Var_Count and resi 51
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Highest_Freq_Var_Count and resi 63+120+121
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Highest_Freq_Var_Count and resi 71+78
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Highest_Freq_Var_Count and resi 74
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Highest_Freq_Var_Count and resi 80+148
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Highest_Freq_Var_Count and resi 86+108
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Highest_Freq_Var_Count and resi 91
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Highest_Freq_Var_Count and resi 136
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Highest_Freq_Var_Count and resi 138
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Highest_Freq_Var_Count and resi 146
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Highest_Freq_Var_Count and resi 154
color 0x2000FF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6w02_Normalized_Highest_Freq_Var_Count.pse, 6w02_Normalized_Highest_Freq_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w02.pdb, 6w02_Inverse_ET
select to_keep, 6w02_Inverse_ET
select to_remove, 6w02_Inverse_ET and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w02_Inverse_ET
color white, target_chain
delete target_chain
select curr_residues, 6w02_Inverse_ET and resi 4+60
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 5+93+147
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 6+58+156
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 7+114+135+148+150+163
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 8
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 9+13+32
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 10+69
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 11
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 12+15+19+23+24+26
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 14+34
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 16+18+22+36+37+38+39+40+43+45+47+48
color 0x00FF04, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 17+116+149
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 20+50+56+62
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 21+151
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 25+65+99+127+140+157
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 27
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 28+82+104
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 29
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 30+57
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 31+84+122
color 0x004DFF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 33
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 35+123
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 41+90+100+165
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 42+52
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 44
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 46
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 49+73+78+83+94+95+96+97+98+113+125+126+128+130+131+132+133+139+155
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 51
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 53+88
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 54+59+68+72+87+152
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 55+89+161
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 61+75+77+85+105+108+109+117+129+136
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 63+71+159
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 64+81+101+103
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 66
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 67+70+121+162
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 74+115
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 76+111+137+141+142+145+167
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 79+92+112+143
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 80+110+134+160
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 86
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 91+102+146+154
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 106+107+144
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 118
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 119+120+164
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 124
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Inverse_ET and resi 138+153+158+166+168
color 0x7600FF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6w02_Inverse_ET.pse, 6w02_Inverse_ET, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w02.pdb, 6w02_Rescaled_EA_Highest_Freq
select to_keep, 6w02_Rescaled_EA_Highest_Freq
select to_remove, 6w02_Rescaled_EA_Highest_Freq and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w02_Rescaled_EA_Highest_Freq
color white, target_chain
delete target_chain
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 4
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 5
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 7
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 8
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 12
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 13
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 14
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 15
color 0x2CFF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 17
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 20
color 0x004DFF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 21
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 22
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 23
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 25
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 26
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 27
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 28
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 29
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 30
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 32
color 0x76FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 33
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 34
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 38+39
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 40
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 41
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 42
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 45
color 0x82FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 46
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 47
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 48
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 49
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 51
color 0x76FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 52
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 53
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 54
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 56
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 58
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 59
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 60
color 0x82FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 61
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 63
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 64
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 67
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 68
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 69
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 70
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 71
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 72
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 73
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 74
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 76
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 77
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 78
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 79
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 80
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 81
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 84
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 86
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 87
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 88
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 90
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 91
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 92
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 93
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 94
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 95+155
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 97
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 98
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 100
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 101
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 102
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 103
color 0x45FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 104
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 105
color 0x00FF4D, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 106
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 108
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 109
color 0x14FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 110
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 111
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 112
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 114
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 115
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 118
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 119
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 120
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 121
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 123
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 125
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 129
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 130
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 131
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 132
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 133
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 134
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 136
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 137
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 138
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 139
color 0xCBFF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 141
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 142
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 143
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 145
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 146
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 148
color 0x00A3FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 149
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 150
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 151
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 154
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 156
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 157
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 160
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 162
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 164
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 166
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 167
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Rescaled_EA_Highest_Freq and resi 168
color 0x3900FF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6w02_Rescaled_EA_Highest_Freq.pse, 6w02_Rescaled_EA_Highest_Freq, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w02.pdb, 6w02_Normalized_Atom_SA
select to_keep, 6w02_Normalized_Atom_SA
select to_remove, 6w02_Normalized_Atom_SA and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w02_Normalized_Atom_SA
color white, target_chain
delete target_chain
select curr_residues, 6w02_Normalized_Atom_SA and resi 4+22+33+90+103+168
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 4+6+11+24+26+32+33+35+39+44+52+58+59+63+64+66+71+78+87+89+103+104+106+108+111+119+121+128+129+132+138+148+155+160+167+168
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 4+60+111+120+156
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 4+5+13+14+19+101+102+131+144
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 4+29+108+141+167
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 4+6+7+12+13+15+17+18+19+20+21+24+32+33+34+38+39+40+42+45+47+50+56+64+66+70+72+75+79+83+85+88+91+93+99+100+104+107+109+110+111+117+121+127+129+132+133+141+148+150+153+156+159+161+164+165+167+168
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 5+11+44+52+55+64+91+102+107+130+131+155+157
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 5+8+20+28+34+40+48+49+58+62+68+72+73+83+84+87+96+99+101+102+103+104+106+111+118+132+134+137+146+150+157+158+159+163
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 5+11+55+76
color 0x39FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 5+20+29+74+84+102+149
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 6+7+10+22+42+46+52+60+76+80+102+126+129+141+147
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 6+71+114+137
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 7+102+165
color 0x00FF04, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 7+67+71+100+131+166
color 0x45FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 8+11+80+91+104+107+148
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 8+44+47+105+130+166
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 8+28+69
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 9+11+23+26+28+30+42+58+72+75+78+90+93+97+106+117+119+142+145+159+163
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 9+10+20+23+28+33+38+39+41+45+59+61+63+66+67+69+70+73+74+75+87+88+89+110+114+115+118+119+120+126+132+137+138+141+142+146+152+156+160+162+163+165+166+168
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 9+101
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 9+10+11+19+22+23+67+68+71+72+83+86+89+106+114+135+138+140+146+149+157+160+168
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 10+120
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 10+11+29+82+90+114+120
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 11+107+150+158
color 0x004DFF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 11+17+28+67+86+105+117+141
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 12+45+156
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 12+22+41+60+62+90+104+107+131+138+156+166
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 13+14+15+29+48+50+69+75+91+105+121
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 13+40+59+77+82+107+111+144
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 14+44+131+141+168
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 14+21+25+30+46+57+59+64+67+77+81+82+114+118+125+128+131+134+141+145+148+159+160
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 14+152
color 0x2CFF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 14+31
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 15+19+28+31+38+156+163
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 17+40+42+46+48+51+56+58+63+76+77+84+86+87+101+104+105+120+121+126+130+132+135+138+152+157+158+162
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 17+74+141+166
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 20+41+82+86+110
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 20+21+51+56+66+68+106+133+167
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 24+55+58+70+87+110+137+138+168
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 25+31+42+44+47+58+72+75+90+118+119+136+154+165
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 25+29+42+58+105+135+148+162
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 25+91+145+148
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 25+40+52+87+133+148+162+163
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 28+58+76+90+120+168
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 28+55+80+114+156
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 29+158
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 29+110+120+159
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 31+62+129+132+148
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 31
color 0x82FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 38+64+83+90+121+130+157+161
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 42+54+55+64+79+119
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 42+48+74+82+99+117+167
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 42
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 44+68+84+100+138+141+142+145+162
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 44+87+118+148+156
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 46+58+76
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 47
color 0x76FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 49+51+55+86+87+132+135
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 49+110+141
color 0x00FF4D, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 55+76
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 58
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 59+66+73+118+145
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 59+63+101+138
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 63
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 66+71
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 67
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 68+115+131+160+163
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 70
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 70
color 0xCBFF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 72+102+107
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 72
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 76+158
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 77+101+136+159+161
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 86+126+156
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 90
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 102+135
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 103+118
color 0x6AFF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 104
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 106
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 107
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 108
color 0x51FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 118+148+159
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 145
color 0x14FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 150
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 157+158
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 6w02_Normalized_Atom_SA and resi 163
color 0xBFFF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6w02_Normalized_Atom_SA.pse, 6w02_Normalized_Atom_SA, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w02.pdb, 6w02_Linear_Epitopes
select to_keep, 6w02_Linear_Epitopes
select to_remove, 6w02_Linear_Epitopes and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w02_Linear_Epitopes
color white, target_chain
delete target_chain
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6w02_Linear_Epitopes.pse, 6w02_Linear_Epitopes, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w02.pdb, 6w02_Structural_Epitopes_3A
select to_keep, 6w02_Structural_Epitopes_3A
select to_remove, 6w02_Structural_Epitopes_3A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w02_Structural_Epitopes_3A
color white, target_chain
delete target_chain
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6w02_Structural_Epitopes_3A.pse, 6w02_Structural_Epitopes_3A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w02.pdb, 6w02_Structural_Epitopes_4A
select to_keep, 6w02_Structural_Epitopes_4A
select to_remove, 6w02_Structural_Epitopes_4A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w02_Structural_Epitopes_4A
color white, target_chain
delete target_chain
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6w02_Structural_Epitopes_4A.pse, 6w02_Structural_Epitopes_4A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w02.pdb, 6w02_Structural_Epitopes_5A
select to_keep, 6w02_Structural_Epitopes_5A
select to_remove, 6w02_Structural_Epitopes_5A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w02_Structural_Epitopes_5A
color white, target_chain
delete target_chain
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6w02_Structural_Epitopes_5A.pse, 6w02_Structural_Epitopes_5A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w02.pdb, 6w02_Structural_Epitopes_6A
select to_keep, 6w02_Structural_Epitopes_6A
select to_remove, 6w02_Structural_Epitopes_6A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w02_Structural_Epitopes_6A
color white, target_chain
delete target_chain
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6w02_Structural_Epitopes_6A.pse, 6w02_Structural_Epitopes_6A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w02.pdb, 6w02_Structural_Epitopes_7A
select to_keep, 6w02_Structural_Epitopes_7A
select to_remove, 6w02_Structural_Epitopes_7A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w02_Structural_Epitopes_7A
color white, target_chain
delete target_chain
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6w02_Structural_Epitopes_7A.pse, 6w02_Structural_Epitopes_7A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w02.pdb, 6w02_Structural_Epitopes_7.5A
select to_keep, 6w02_Structural_Epitopes_7.5A
select to_remove, 6w02_Structural_Epitopes_7.5A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w02_Structural_Epitopes_7.5A
color white, target_chain
delete target_chain
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6w02_Structural_Epitopes_7.5A.pse, 6w02_Structural_Epitopes_7.5A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6w02.pdb, 6w02_Structural_Epitopes_8A
select to_keep, 6w02_Structural_Epitopes_8A
select to_remove, 6w02_Structural_Epitopes_8A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6w02_Structural_Epitopes_8A
color white, target_chain
delete target_chain
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6w02_Structural_Epitopes_8A.pse, 6w02_Structural_Epitopes_8A, -1, pse
set grid_mode, 1
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6w02_combined.pse, 6w02_Normalized_Unique_Var_Count or 6w02_Normalized_Var_Count or 6w02_Normalized_Highest_Freq_Var_Count or 6w02_Inverse_ET or 6w02_Rescaled_EA_Highest_Freq or 6w02_Normalized_Atom_SA or 6w02_Linear_Epitopes or 6w02_Structural_Epitopes_3A or 6w02_Structural_Epitopes_4A or 6w02_Structural_Epitopes_5A or 6w02_Structural_Epitopes_6A or 6w02_Structural_Epitopes_7A or 6w02_Structural_Epitopes_7.5A or 6w02_Structural_Epitopes_8A, -1, pse
delete all