load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6woj.pdb, 6woj_Normalized_Unique_Var_Count
select to_keep, 6woj_Normalized_Unique_Var_Count
select to_remove, 6woj_Normalized_Unique_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6woj_Normalized_Unique_Var_Count
color white, target_chain
delete target_chain
select curr_residues, 6woj_Normalized_Unique_Var_Count and resi 3+5+8+12+13+15+20+21+22+23+26+28+29+30+34+38+39+40+41+46+48+49+53+54+56+58+59+61+63+68+69+76+77+80+81+86+87+88+90+94+95+98+100+102+109+111+112+115+118+120+129+130+131+132+134+138+139+141+142+143+146+149+151+154+155+156+160+166+168+172
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Unique_Var_Count and resi 4+17+32+33+42+45+47+60+64+67+70+71+73+79+84+91+92+93+97+101+103+104+105+106+108+110+114+119+121+123+125+133+136+148+150+157+162+164+170+171
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Unique_Var_Count and resi 7+25+27+51+52+72+74+78+145+167+169
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Unique_Var_Count and resi 14+137
color 0xFF0000, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6woj_Normalized_Unique_Var_Count.pse, 6woj_Normalized_Unique_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6woj.pdb, 6woj_Normalized_Var_Count
select to_keep, 6woj_Normalized_Var_Count
select to_remove, 6woj_Normalized_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6woj_Normalized_Var_Count
color white, target_chain
delete target_chain
select curr_residues, 6woj_Normalized_Var_Count and resi 3+17+34+38+39+47+49+54+60+68+69+72+73+76+87+92+93+97+98+101+102+106+111+114+115+125+130+141+142+149+151+156+157+160+162+164
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 4+5+41+42+45+61+70+103+104+105+112+123+145+168+171
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 7+12+25+88+110+131+150+169
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 13+21+64+67+167
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 14
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 27
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 30+84+109
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 32+138
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 33
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 51
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 52+119+129+137+166
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 63+120
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 71
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 74
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 78
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 79
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 80+121
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 86+108
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 91+170
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 133
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 136
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 146
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 148
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Var_Count and resi 154
color 0x2000FF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6woj_Normalized_Var_Count.pse, 6woj_Normalized_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6woj.pdb, 6woj_Normalized_Highest_Freq_Var_Count
select to_keep, 6woj_Normalized_Highest_Freq_Var_Count
select to_remove, 6woj_Normalized_Highest_Freq_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6woj_Normalized_Highest_Freq_Var_Count
color white, target_chain
delete target_chain
select curr_residues, 6woj_Normalized_Highest_Freq_Var_Count and resi 3+4+17+34+38+39+45+47+49+54+68+69+76+87+92+93+97+98+102+103+104+105+111+115+123+125+130+141+142+145+149+151+156+160+162
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Highest_Freq_Var_Count and resi 5+41+42+61+70+84+112+168+171
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Highest_Freq_Var_Count and resi 7+25+30+52+64+109+137+150+167+169
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Highest_Freq_Var_Count and resi 12+67+79+88+110+131
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Highest_Freq_Var_Count and resi 13+21
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Highest_Freq_Var_Count and resi 14
color 0xFF1800, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Highest_Freq_Var_Count and resi 27
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Highest_Freq_Var_Count and resi 32+119+129+166
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Highest_Freq_Var_Count and resi 33+133
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Highest_Freq_Var_Count and resi 51
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Highest_Freq_Var_Count and resi 63+120+121
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Highest_Freq_Var_Count and resi 71+78
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Highest_Freq_Var_Count and resi 74
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Highest_Freq_Var_Count and resi 80+148
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Highest_Freq_Var_Count and resi 86+108
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Highest_Freq_Var_Count and resi 91
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Highest_Freq_Var_Count and resi 136
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Highest_Freq_Var_Count and resi 138
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Highest_Freq_Var_Count and resi 146
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Highest_Freq_Var_Count and resi 154
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Highest_Freq_Var_Count and resi 170
color 0x0028FF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6woj_Normalized_Highest_Freq_Var_Count.pse, 6woj_Normalized_Highest_Freq_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6woj.pdb, 6woj_Inverse_ET
select to_keep, 6woj_Inverse_ET
select to_remove, 6woj_Inverse_ET and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6woj_Inverse_ET
color white, target_chain
delete target_chain
select curr_residues, 6woj_Inverse_ET and resi 3+119+120+164
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 4+60
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 5+93+147
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 6+58+156
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 7+114+135+148+150+163+169
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 8
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 9+13+32
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 10+69
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 11
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 12+15+19+23+24+26
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 14+34
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 16+18+22+36+37+38+39+40+43+45+47+48
color 0x00FF04, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 17+116+149
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 20+50+56+62
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 21+151
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 25+65+99+127+140+157
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 27
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 28+82+104
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 29+172
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 30+57
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 31+84+122
color 0x004DFF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 33
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 35+123
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 41+90+100+165
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 42+52
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 44
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 46
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 49+73+78+83+94+95+96+97+98+113+125+126+128+130+131+132+133+139+155
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 51
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 53+88
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 54+59+68+72+87+152
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 55+89+161
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 61+75+77+85+105+108+109+117+129+136
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 63+71+159
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 64+81+101+103
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 66
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 67+70+121+162
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 74+115
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 76+111+137+141+142+145+167
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 79+92+112+143
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 80+110+134+160
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 86
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 91+102+146+154+171
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 106+107+144
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 118+170
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 124
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Inverse_ET and resi 138+153+158+166+168
color 0x7600FF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6woj_Inverse_ET.pse, 6woj_Inverse_ET, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6woj.pdb, 6woj_Rescaled_EA_Highest_Freq
select to_keep, 6woj_Rescaled_EA_Highest_Freq
select to_remove, 6woj_Rescaled_EA_Highest_Freq and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6woj_Rescaled_EA_Highest_Freq
color white, target_chain
delete target_chain
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 3
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 4
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 5
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 7
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 8
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 12
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 13
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 14
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 15
color 0x2CFF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 17
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 20
color 0x004DFF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 21
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 22
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 23
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 25
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 26
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 27
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 28
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 29
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 30
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 32
color 0x76FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 33
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 34
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 38+39
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 40
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 41
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 42
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 45
color 0x82FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 46
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 47
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 48
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 49
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 51
color 0x76FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 52
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 53
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 54
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 56
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 58
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 59
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 60
color 0x82FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 61
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 63
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 64
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 67
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 68
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 69
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 70
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 71
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 72
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 73
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 74
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 76
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 77
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 78
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 79
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 80
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 81
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 84
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 86
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 87
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 88
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 90
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 91
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 92
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 93
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 94
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 95+155
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 97
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 98
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 100
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 101
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 102
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 103
color 0x45FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 104
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 105
color 0x00FF4D, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 106
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 108
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 109
color 0x14FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 110
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 111
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 112
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 114
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 115
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 118
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 119
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 120
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 121
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 123
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 125
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 129
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 130
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 131
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 132
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 133
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 134
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 136
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 137
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 138
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 139
color 0xCBFF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 141
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 142
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 143
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 145
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 146
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 148
color 0x00A3FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 149
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 150
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 151
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 154
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 156
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 157
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 160
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 162
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 164
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 166
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 167
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 168
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 169
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 170
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 171
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Rescaled_EA_Highest_Freq and resi 172
color 0x7600FF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6woj_Rescaled_EA_Highest_Freq.pse, 6woj_Rescaled_EA_Highest_Freq, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6woj.pdb, 6woj_Normalized_Atom_SA
select to_keep, 6woj_Normalized_Atom_SA
select to_remove, 6woj_Normalized_Atom_SA and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6woj_Normalized_Atom_SA
color white, target_chain
delete target_chain
select curr_residues, 6woj_Normalized_Atom_SA and resi 3+5
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 3+11+71+148+156
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 3+4+42+47+56+70+107+119+126+131+133+138+163+168
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 3+4+14+20+22+59+64+115+158
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 3+159+170
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 4+10+13+55+82+83+136+144
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 4+5+6+7+9+10+12+13+19+21+22+26+29+34+41+45+47+49+50+55+56+59+63+64+73+74+75+83+85+87+88+89+91+93+98+99+100+101+107+109+111+115+117+119+121+122+127+129+133+134+138+142+144+146+148+153+157+158+159+161+162+163+164+165+166+167+168
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 5+13+14+21+25+31+51+52+86+90+100+106+117+118+131+141+146
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 5+42+55+57+100
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 5+91+161
color 0x004DFF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 6+9+63+70+72+108+135
color 0x00FF4D, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 6+7+19+24+30+32+40+58+63+64+68+72+80+90+104+106+118+119+138+155+156+168
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 7+10+12+14+15+18+20+23+25+28+31+33+35+38+39+40+44+45+52+57+59+64+66+67+70+75+78+87+88+103+104+110+114+119+120+126+129+132+137+141+142+148+150+152+159+160+162+165+166
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 7+69+158
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 7+107+150+157+166
color 0x8EFF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 8+80+104+114+168
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 8+60+102+145+160
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 8+9+20+25+39+45+49+61+62+68+71+72+73+83+84+85+88+103+104+106+115+117+121+132+137+140+150+168+169
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 8+22+38+45+101+130+142+159+161+162+169
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 9+11+23+28+31+34+41+42+67+72+76+77+83+86+89+105+111+126+138+152+156
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 9+15+17+23+28+40+48+51+52+59+62+77+81+84+86+87+89+102+111+118+128+130+134+135+140+145+147+149+160+168
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 10+14+24+27+42+44+48+60+63+72+75+89+93+96+97+101+119+120+126+128+132+134+146+155+156+157+160+162+163+170+171
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 10+11+63
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 11+38+42+62+84+132+166
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 12+48+74+77+82+149
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 12+22+29+42+46+50+75+81+87+100+102+114+157+163+167
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 13+20+49+62+78+82+104+120+125+132+159
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 14+54+56+79+117+121+135
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 14+25+58
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 14
color 0x45FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 15+19+25+100+114+129+135
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 17+19+24+26+59+64+66+73+105+108+138+156+162
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 17+87+99
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 20+42+68+74+80+82+131
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 21+22+44+55+58+68+135+138+150+168
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 22+46+64+66+67+71+76+82+87+101+105+114+121+129+131+135+145+146+157+158+159+162+171
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 28
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 28+90+110+144+160
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 28
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 29+40+49+58+59+102+103+118
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 29+71
color 0x51FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 31+105+131+138+141
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 33+87+117+148+156
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 33+76+105+118+119+145+156
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 40+86+106+120+136+154+167+172
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 41+156+165+170
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 42
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 44+120
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 46+71+87
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 47+52+130
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 47+101+163
color 0x2CFF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 55+172
color 0xFF1800, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 56+90+91+107+167+170
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 60+66+69+91+104+105+106+111+121+130+131+132+168
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 66+72+120+166+169
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 66+106
color 0x76FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 67+75+90+114+167+171
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 67+70
color 0x39FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 67+103+111+159
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 68+77+101
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 72+104
color 0x00FF04, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 74
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 76
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 84+120
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 86+131+172
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 90
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 91
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 101+137+145
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 110
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 114
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 118
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 120
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 133+137+171
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 145+172
color 0x14FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 148
color 0xCBFF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 152+158
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 156
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 158+162
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 169
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 169
color 0x82FF00, curr_residues
delete curr_residues
select curr_residues, 6woj_Normalized_Atom_SA and resi 171
color 0x6AFF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6woj_Normalized_Atom_SA.pse, 6woj_Normalized_Atom_SA, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6woj.pdb, 6woj_Linear_Epitopes
select to_keep, 6woj_Linear_Epitopes
select to_remove, 6woj_Linear_Epitopes and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6woj_Linear_Epitopes
color white, target_chain
delete target_chain
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6woj_Linear_Epitopes.pse, 6woj_Linear_Epitopes, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6woj.pdb, 6woj_Structural_Epitopes_3A
select to_keep, 6woj_Structural_Epitopes_3A
select to_remove, 6woj_Structural_Epitopes_3A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6woj_Structural_Epitopes_3A
color white, target_chain
delete target_chain
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6woj_Structural_Epitopes_3A.pse, 6woj_Structural_Epitopes_3A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6woj.pdb, 6woj_Structural_Epitopes_4A
select to_keep, 6woj_Structural_Epitopes_4A
select to_remove, 6woj_Structural_Epitopes_4A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6woj_Structural_Epitopes_4A
color white, target_chain
delete target_chain
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6woj_Structural_Epitopes_4A.pse, 6woj_Structural_Epitopes_4A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6woj.pdb, 6woj_Structural_Epitopes_5A
select to_keep, 6woj_Structural_Epitopes_5A
select to_remove, 6woj_Structural_Epitopes_5A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6woj_Structural_Epitopes_5A
color white, target_chain
delete target_chain
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6woj_Structural_Epitopes_5A.pse, 6woj_Structural_Epitopes_5A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6woj.pdb, 6woj_Structural_Epitopes_6A
select to_keep, 6woj_Structural_Epitopes_6A
select to_remove, 6woj_Structural_Epitopes_6A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6woj_Structural_Epitopes_6A
color white, target_chain
delete target_chain
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6woj_Structural_Epitopes_6A.pse, 6woj_Structural_Epitopes_6A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6woj.pdb, 6woj_Structural_Epitopes_7A
select to_keep, 6woj_Structural_Epitopes_7A
select to_remove, 6woj_Structural_Epitopes_7A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6woj_Structural_Epitopes_7A
color white, target_chain
delete target_chain
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6woj_Structural_Epitopes_7A.pse, 6woj_Structural_Epitopes_7A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6woj.pdb, 6woj_Structural_Epitopes_7.5A
select to_keep, 6woj_Structural_Epitopes_7.5A
select to_remove, 6woj_Structural_Epitopes_7.5A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6woj_Structural_Epitopes_7.5A
color white, target_chain
delete target_chain
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6woj_Structural_Epitopes_7.5A.pse, 6woj_Structural_Epitopes_7.5A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/6woj.pdb, 6woj_Structural_Epitopes_8A
select to_keep, 6woj_Structural_Epitopes_8A
select to_remove, 6woj_Structural_Epitopes_8A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6woj_Structural_Epitopes_8A
color white, target_chain
delete target_chain
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6woj_Structural_Epitopes_8A.pse, 6woj_Structural_Epitopes_8A, -1, pse
set grid_mode, 1
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp3/structure/6woj_combined.pse, 6woj_Normalized_Unique_Var_Count or 6woj_Normalized_Var_Count or 6woj_Normalized_Highest_Freq_Var_Count or 6woj_Inverse_ET or 6woj_Rescaled_EA_Highest_Freq or 6woj_Normalized_Atom_SA or 6woj_Linear_Epitopes or 6woj_Structural_Epitopes_3A or 6woj_Structural_Epitopes_4A or 6woj_Structural_Epitopes_5A or 6woj_Structural_Epitopes_6A or 6woj_Structural_Epitopes_7A or 6woj_Structural_Epitopes_7.5A or 6woj_Structural_Epitopes_8A, -1, pse
delete all