load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/3vcb.pdb, 3vcb_Normalized_Unique_Var_Count
select to_keep, 3vcb_Normalized_Unique_Var_Count
select to_remove, 3vcb_Normalized_Unique_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 3vcb_Normalized_Unique_Var_Count
color white, target_chain
delete target_chain
select curr_residues, 3vcb_Normalized_Unique_Var_Count and resi 0+49+54+69+70+72+74+77+81
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Unique_Var_Count and resi 3+4+9+15+16+18+20+25+30+35+37+41+46+48+58+61+63+65+84+87
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Unique_Var_Count and resi 34+60
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Unique_Var_Count and resi 45
color 0xFF0000, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/3vcb_Normalized_Unique_Var_Count.pse, 3vcb_Normalized_Unique_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/3vcb.pdb, 3vcb_Normalized_Var_Count
select to_keep, 3vcb_Normalized_Var_Count
select to_remove, 3vcb_Normalized_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 3vcb_Normalized_Var_Count
color white, target_chain
delete target_chain
select curr_residues, 3vcb_Normalized_Var_Count and resi 0
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Var_Count and resi 3+4+18+20+30+37+41+48+61+65+87
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Var_Count and resi 9+16+35+77
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Var_Count and resi 15+54+84
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Var_Count and resi 25+58
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Var_Count and resi 34
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Var_Count and resi 45
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Var_Count and resi 46+60
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Var_Count and resi 49
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Var_Count and resi 63
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Var_Count and resi 69+72+74
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Var_Count and resi 70
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Var_Count and resi 81
color 0x00FF10, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/3vcb_Normalized_Var_Count.pse, 3vcb_Normalized_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/3vcb.pdb, 3vcb_Normalized_Highest_Freq_Var_Count
select to_keep, 3vcb_Normalized_Highest_Freq_Var_Count
select to_remove, 3vcb_Normalized_Highest_Freq_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 3vcb_Normalized_Highest_Freq_Var_Count
color white, target_chain
delete target_chain
select curr_residues, 3vcb_Normalized_Highest_Freq_Var_Count and resi 0+15+84
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Highest_Freq_Var_Count and resi 3+4+18+20+30+37+41+48+61+65+77+87
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Highest_Freq_Var_Count and resi 9+16+35+69+72+74
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Highest_Freq_Var_Count and resi 25+58
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Highest_Freq_Var_Count and resi 34
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Highest_Freq_Var_Count and resi 45
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Highest_Freq_Var_Count and resi 46
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Highest_Freq_Var_Count and resi 49
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Highest_Freq_Var_Count and resi 54
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Highest_Freq_Var_Count and resi 60
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Highest_Freq_Var_Count and resi 63
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Highest_Freq_Var_Count and resi 70
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Highest_Freq_Var_Count and resi 81
color 0x00FF28, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/3vcb_Normalized_Highest_Freq_Var_Count.pse, 3vcb_Normalized_Highest_Freq_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/3vcb.pdb, 3vcb_Inverse_ET
select to_keep, 3vcb_Inverse_ET
select to_remove, 3vcb_Inverse_ET and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 3vcb_Inverse_ET
color white, target_chain
delete target_chain
select curr_residues, 3vcb_Inverse_ET and resi 0+61
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 1
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 2+9+39
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 3+14+85
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 4
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 5+82
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 6+52
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 7
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 8
color 0x8EFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 10+44+59+78+79
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 11+43+58
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 12+16+84
color 0x6AFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 13
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 15+64
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 17+37+60
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 18
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 19
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 20+73
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 21
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 25+55
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 26+49
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 27
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 28
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 29
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 30
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 31
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 32
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 33
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 34
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 35
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 36+38
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 40+48
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 41
color 0xFF1800, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 42+50
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 45+65+66
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 46+80
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 47+87
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 51
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 53+86
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 54+62
color 0xFF2400, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 56
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 57+63+77
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 67
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 69
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 70+72
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 71
color 0x004DFF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 74
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 75+88
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 76
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 81
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 3vcb_Inverse_ET and resi 83
color 0x2CFF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/3vcb_Inverse_ET.pse, 3vcb_Inverse_ET, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/3vcb.pdb, 3vcb_Rescaled_EA_Highest_Freq
select to_keep, 3vcb_Rescaled_EA_Highest_Freq
select to_remove, 3vcb_Rescaled_EA_Highest_Freq and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 3vcb_Rescaled_EA_Highest_Freq
color white, target_chain
delete target_chain
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 0
color 0x6AFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 3
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 4
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 9
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 15
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 16
color 0x14FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 18
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 20
color 0x82FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 25
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 30
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 34
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 35
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 37
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 41
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 45
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 46
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 48
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 49
color 0x39FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 54
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 58
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 60
color 0x6AFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 61
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 63
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 65
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 69
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 70
color 0x51FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 72
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 74
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 77
color 0x39FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 81
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 84
color 0x51FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Rescaled_EA_Highest_Freq and resi 87
color 0x004DFF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/3vcb_Rescaled_EA_Highest_Freq.pse, 3vcb_Rescaled_EA_Highest_Freq, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/3vcb.pdb, 3vcb_Normalized_Atom_SA
select to_keep, 3vcb_Normalized_Atom_SA
select to_remove, 3vcb_Normalized_Atom_SA and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 3vcb_Normalized_Atom_SA
color white, target_chain
delete target_chain
select curr_residues, 3vcb_Normalized_Atom_SA and resi 0+25+35+43+72
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 0+8+37+39+51
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 0+40+81+84
color 0x39FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 0+13+42+43
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 1+8+26+38+45+69+85
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 1+2+18+19+35+36+39+40+41+47+49+52+53+56+66+68+71+76+77
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 1+4+10+13+14+15+22+24+27+30+32+37+39+42+45+49+50+51+57+64+68+69+78+85
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 1+40+41+46+51+53+54+58+67+72+77+79+81+83+87
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 1+82
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 2+4+25+26+27+28+31+39+40+42+47+52+79+80+81+82+84
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 3+4+16+20+21+26+29+31+32+33+34+35+36+38+40+42+43+46+48+52+53+58+61+62+64+65+67+69+76+82+83+84+85+86
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 3+16+21+27+51+73+84+87
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 3+14+23
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 3+38+46+51+77
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 4+10+14+15+22+30+32+33+44+48+58+65+70+72+73+79
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 4+25+40+44+72
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 4+19+21+31+70+74
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 4
color 0x2CFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 4
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 5+21+38+48+51+75
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 5+14+15+65+68+70+88
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 5+11+17+19+21+40+44+49+61+62
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 7+64+65+83+87
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 7+11+38+42+71
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 7+33+41+45+86
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 7+19+23+33+34+38+39+46+47+51+80+88
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 8+11+30+31+33+36+43+45+50+52+62+64+68+69+70+72+74+85
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 8+72
color 0x00FF04, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 9+11+19+21+53+54+75+88
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 9+41+58
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 9+13+23+66+68+80
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 9+11+31
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 9+23+41+78
color 0x004DFF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 10+18+42+45+52+53
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 10+14+29+37+41+42+43+46+47+48+52+77+81+82+83+86+87+88
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 11+38
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 13+41+50+64+68+85
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 14+19+26
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 14
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 15+34+61
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 15+80+87
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 15+69+73
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 16+30+31+41+68
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 17+24+25+51+52
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 17+41+67+68+70+88
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 18+26+45+78+87
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 19
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 21+24+83
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 22+86
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 22+69
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 22+30+31+47
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 22+70+77
color 0x76FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 26+61+80
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 27+48+70
color 0xCBFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 27
color 0xFF1800, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 28+68+71+83+84
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 31
color 0x00FF4D, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 32+36+75
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 34
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 37+38+53
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 37
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 37+74+84
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 40+85+87
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 43
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 44+87
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 45+81
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 45+47
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 45
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 46+73
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 47+73+75+79
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 48
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 49
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 52+83
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 58+87
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 67
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 77+82
color 0x45FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 80+88
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 82
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 84+85
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 86
color 0x82FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 88
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, 3vcb_Normalized_Atom_SA and resi 88
color 0xFF4900, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/3vcb_Normalized_Atom_SA.pse, 3vcb_Normalized_Atom_SA, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/3vcb.pdb, 3vcb_Linear_Epitopes
select to_keep, 3vcb_Linear_Epitopes
select to_remove, 3vcb_Linear_Epitopes and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 3vcb_Linear_Epitopes
color white, target_chain
delete target_chain
select curr_residues, 3vcb_Linear_Epitopes and resi 5
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 3vcb_Linear_Epitopes and resi 6+52
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Linear_Epitopes and resi 10+44+78+79
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Linear_Epitopes and resi 11+43
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 3vcb_Linear_Epitopes and resi 13
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Linear_Epitopes and resi 14
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 3vcb_Linear_Epitopes and resi 32
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Linear_Epitopes and resi 33
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 3vcb_Linear_Epitopes and resi 38
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 3vcb_Linear_Epitopes and resi 39
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Linear_Epitopes and resi 40
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Linear_Epitopes and resi 42+50
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 3vcb_Linear_Epitopes and resi 51
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 3vcb_Linear_Epitopes and resi 55
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 3vcb_Linear_Epitopes and resi 56
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Linear_Epitopes and resi 57
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Linear_Epitopes and resi 75
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 3vcb_Linear_Epitopes and resi 76
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 3vcb_Linear_Epitopes and resi 80
color 0xB3FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/3vcb_Linear_Epitopes.pse, 3vcb_Linear_Epitopes, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/3vcb.pdb, 3vcb_Structural_Epitopes_3A
select to_keep, 3vcb_Structural_Epitopes_3A
select to_remove, 3vcb_Structural_Epitopes_3A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 3vcb_Structural_Epitopes_3A
color white, target_chain
delete target_chain
select curr_residues, 3vcb_Structural_Epitopes_3A and resi 10+44+78+79
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_3A and resi 11+43
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_3A and resi 13
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_3A and resi 14
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_3A and resi 39
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_3A and resi 40
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_3A and resi 42
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_3A and resi 51
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_3A and resi 75
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_3A and resi 76
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_3A and resi 80
color 0xB3FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/3vcb_Structural_Epitopes_3A.pse, 3vcb_Structural_Epitopes_3A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/3vcb.pdb, 3vcb_Structural_Epitopes_4A
select to_keep, 3vcb_Structural_Epitopes_4A
select to_remove, 3vcb_Structural_Epitopes_4A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 3vcb_Structural_Epitopes_4A
color white, target_chain
delete target_chain
select curr_residues, 3vcb_Structural_Epitopes_4A and resi 2+39
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_4A and resi 10+44+78+79
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_4A and resi 11+43
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_4A and resi 13
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_4A and resi 14
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_4A and resi 32
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_4A and resi 36+38
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_4A and resi 40
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_4A and resi 42
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_4A and resi 51
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_4A and resi 52
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_4A and resi 56
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_4A and resi 57
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_4A and resi 62
color 0xFF2400, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_4A and resi 73
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_4A and resi 75
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_4A and resi 76
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_4A and resi 80
color 0xB3FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/3vcb_Structural_Epitopes_4A.pse, 3vcb_Structural_Epitopes_4A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/3vcb.pdb, 3vcb_Structural_Epitopes_5A
select to_keep, 3vcb_Structural_Epitopes_5A
select to_remove, 3vcb_Structural_Epitopes_5A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 3vcb_Structural_Epitopes_5A
color white, target_chain
delete target_chain
select curr_residues, 3vcb_Structural_Epitopes_5A and resi 2+39
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_5A and resi 5+82
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_5A and resi 6+52
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_5A and resi 10+44+78+79
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_5A and resi 11+43
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_5A and resi 13
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_5A and resi 14
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_5A and resi 32
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_5A and resi 33
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_5A and resi 36+38
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_5A and resi 40
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_5A and resi 42+50
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_5A and resi 51
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_5A and resi 56
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_5A and resi 57
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_5A and resi 62
color 0xFF2400, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_5A and resi 73
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_5A and resi 75
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_5A and resi 76
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_5A and resi 80
color 0xB3FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/3vcb_Structural_Epitopes_5A.pse, 3vcb_Structural_Epitopes_5A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/3vcb.pdb, 3vcb_Structural_Epitopes_6A
select to_keep, 3vcb_Structural_Epitopes_6A
select to_remove, 3vcb_Structural_Epitopes_6A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 3vcb_Structural_Epitopes_6A
color white, target_chain
delete target_chain
select curr_residues, 3vcb_Structural_Epitopes_6A and resi 2+39
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_6A and resi 5+82
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_6A and resi 6+52
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_6A and resi 10+44+78+79
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_6A and resi 11+43
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_6A and resi 13
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_6A and resi 14
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_6A and resi 17
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_6A and resi 32
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_6A and resi 33
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_6A and resi 36+38
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_6A and resi 40
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_6A and resi 42+50
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_6A and resi 51
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_6A and resi 56
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_6A and resi 57
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_6A and resi 62
color 0xFF2400, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_6A and resi 73
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_6A and resi 75
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_6A and resi 76
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_6A and resi 80
color 0xB3FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/3vcb_Structural_Epitopes_6A.pse, 3vcb_Structural_Epitopes_6A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/3vcb.pdb, 3vcb_Structural_Epitopes_7A
select to_keep, 3vcb_Structural_Epitopes_7A
select to_remove, 3vcb_Structural_Epitopes_7A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 3vcb_Structural_Epitopes_7A
color white, target_chain
delete target_chain
select curr_residues, 3vcb_Structural_Epitopes_7A and resi 2+39
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7A and resi 5+82
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7A and resi 6+52
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7A and resi 10+44+78+79
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7A and resi 11+43
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7A and resi 13
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7A and resi 14+85
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7A and resi 17
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7A and resi 32
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7A and resi 33
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7A and resi 36+38
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7A and resi 40
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7A and resi 42+50
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7A and resi 51
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7A and resi 56
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7A and resi 57
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7A and resi 62
color 0xFF2400, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7A and resi 73
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7A and resi 75
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7A and resi 76
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7A and resi 80
color 0xB3FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/3vcb_Structural_Epitopes_7A.pse, 3vcb_Structural_Epitopes_7A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/3vcb.pdb, 3vcb_Structural_Epitopes_7.5A
select to_keep, 3vcb_Structural_Epitopes_7.5A
select to_remove, 3vcb_Structural_Epitopes_7.5A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 3vcb_Structural_Epitopes_7.5A
color white, target_chain
delete target_chain
select curr_residues, 3vcb_Structural_Epitopes_7.5A and resi 2+39
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7.5A and resi 5+82
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7.5A and resi 6+52
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7.5A and resi 10+44+78+79
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7.5A and resi 11+43
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7.5A and resi 13
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7.5A and resi 14+85
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7.5A and resi 17
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7.5A and resi 32
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7.5A and resi 33
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7.5A and resi 36+38
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7.5A and resi 40
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7.5A and resi 42+50
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7.5A and resi 51
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7.5A and resi 56
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7.5A and resi 57
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7.5A and resi 62
color 0xFF2400, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7.5A and resi 73
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7.5A and resi 75
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7.5A and resi 76
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_7.5A and resi 80
color 0xB3FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/3vcb_Structural_Epitopes_7.5A.pse, 3vcb_Structural_Epitopes_7.5A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/3vcb.pdb, 3vcb_Structural_Epitopes_8A
select to_keep, 3vcb_Structural_Epitopes_8A
select to_remove, 3vcb_Structural_Epitopes_8A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 3vcb_Structural_Epitopes_8A
color white, target_chain
delete target_chain
select curr_residues, 3vcb_Structural_Epitopes_8A and resi 2+39
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_8A and resi 5+82
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_8A and resi 6+52
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_8A and resi 10+44+78+79
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_8A and resi 11+43
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_8A and resi 13
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_8A and resi 14+85
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_8A and resi 17
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_8A and resi 32
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_8A and resi 33
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_8A and resi 36+38
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_8A and resi 40
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_8A and resi 42+50
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_8A and resi 51
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_8A and resi 56
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_8A and resi 57
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_8A and resi 62
color 0xFF2400, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_8A and resi 73
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_8A and resi 75+88
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_8A and resi 76
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 3vcb_Structural_Epitopes_8A and resi 80
color 0xB3FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/3vcb_Structural_Epitopes_8A.pse, 3vcb_Structural_Epitopes_8A, -1, pse
set grid_mode, 1
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/3vcb_combined.pse, 3vcb_Normalized_Unique_Var_Count or 3vcb_Normalized_Var_Count or 3vcb_Normalized_Highest_Freq_Var_Count or 3vcb_Inverse_ET or 3vcb_Rescaled_EA_Highest_Freq or 3vcb_Normalized_Atom_SA or 3vcb_Linear_Epitopes or 3vcb_Structural_Epitopes_3A or 3vcb_Structural_Epitopes_4A or 3vcb_Structural_Epitopes_5A or 3vcb_Structural_Epitopes_6A or 3vcb_Structural_Epitopes_7A or 3vcb_Structural_Epitopes_7.5A or 3vcb_Structural_Epitopes_8A, -1, pse
delete all