load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/nsp4_model_01.pdb, nsp4_model_01_Normalized_Unique_Var_Count
select to_keep, nsp4_model_01_Normalized_Unique_Var_Count
select to_remove, nsp4_model_01_Normalized_Unique_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, nsp4_model_01_Normalized_Unique_Var_Count
color white, target_chain
delete target_chain
select curr_residues, nsp4_model_01_Normalized_Unique_Var_Count and resi 413+414+419+425+426+428+430+432+436+437+438+439+442+447+449+453+458+460+470+473+475+477+495+498
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Unique_Var_Count and resi 446+472
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Unique_Var_Count and resi 457
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Unique_Var_Count and resi 461+466+480+481+483+485+488+492
color 0x00FF59, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/nsp4_model_01_Normalized_Unique_Var_Count.pse, nsp4_model_01_Normalized_Unique_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/nsp4_model_01.pdb, nsp4_model_01_Normalized_Var_Count
select to_keep, nsp4_model_01_Normalized_Var_Count
select to_remove, nsp4_model_01_Normalized_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, nsp4_model_01_Normalized_Var_Count
color white, target_chain
delete target_chain
select curr_residues, nsp4_model_01_Normalized_Var_Count and resi 413+414+428+430+436+442+449+453+460+473+477+498
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Var_Count and resi 419+426+447+488
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Var_Count and resi 425+466+495
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Var_Count and resi 432+470
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Var_Count and resi 437+480+483+485
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Var_Count and resi 438
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Var_Count and resi 439
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Var_Count and resi 446
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Var_Count and resi 457
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Var_Count and resi 458+472
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Var_Count and resi 461
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Var_Count and resi 475
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Var_Count and resi 481
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Var_Count and resi 492
color 0x00FF10, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/nsp4_model_01_Normalized_Var_Count.pse, nsp4_model_01_Normalized_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/nsp4_model_01.pdb, nsp4_model_01_Normalized_Highest_Freq_Var_Count
select to_keep, nsp4_model_01_Normalized_Highest_Freq_Var_Count
select to_remove, nsp4_model_01_Normalized_Highest_Freq_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, nsp4_model_01_Normalized_Highest_Freq_Var_Count
color white, target_chain
delete target_chain
select curr_residues, nsp4_model_01_Normalized_Highest_Freq_Var_Count and resi 413+414+428+430+436+442+449+453+460+473+477+488+498
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Highest_Freq_Var_Count and resi 419+426+447+480+483+485
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Highest_Freq_Var_Count and resi 425+495
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Highest_Freq_Var_Count and resi 432+470
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Highest_Freq_Var_Count and resi 437+466
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Highest_Freq_Var_Count and resi 438
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Highest_Freq_Var_Count and resi 439
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Highest_Freq_Var_Count and resi 446
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Highest_Freq_Var_Count and resi 457
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Highest_Freq_Var_Count and resi 458
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Highest_Freq_Var_Count and resi 461
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Highest_Freq_Var_Count and resi 472
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Highest_Freq_Var_Count and resi 475
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Highest_Freq_Var_Count and resi 481
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Highest_Freq_Var_Count and resi 492
color 0x00FF28, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/nsp4_model_01_Normalized_Highest_Freq_Var_Count.pse, nsp4_model_01_Normalized_Highest_Freq_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/nsp4_model_01.pdb, nsp4_model_01_Inverse_ET
select to_keep, nsp4_model_01_Inverse_ET
select to_remove, nsp4_model_01_Inverse_ET and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, nsp4_model_01_Inverse_ET
color white, target_chain
delete target_chain
select curr_residues, nsp4_model_01_Inverse_ET and resi 411
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 412+419+451
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 413+424+496
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 414
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 415+493
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 416+464
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 417+436
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 418
color 0x8EFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 420+456+471+489+490
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 421+455+470
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 422+426+495
color 0x6AFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 423
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 425+476
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 427+449+472
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 428
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 429
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 430+484
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 431
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 432+467
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 433+461
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 434
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 435
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 437+485
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 438
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 439
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 440
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 441
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 442
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 443
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 444
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 445
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 446
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 447
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 448+450
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 452+460
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 453
color 0xFF1800, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 454+462
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 457+477+478
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 458+491
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 459+498
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 463
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 465+497
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 466+474
color 0xFF2400, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 468
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 469+475+488
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 473
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 479
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 480
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 481+483
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 482
color 0x004DFF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 486+499
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 487
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 492
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Inverse_ET and resi 494
color 0x2CFF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/nsp4_model_01_Inverse_ET.pse, nsp4_model_01_Inverse_ET, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/nsp4_model_01.pdb, nsp4_model_01_Rescaled_EA_Highest_Freq
select to_keep, nsp4_model_01_Rescaled_EA_Highest_Freq
select to_remove, nsp4_model_01_Rescaled_EA_Highest_Freq and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, nsp4_model_01_Rescaled_EA_Highest_Freq
color white, target_chain
delete target_chain
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 413
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 414
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 419
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 425
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 426
color 0x14FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 428
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 430
color 0x82FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 432
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 436
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 437
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 438
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 439
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 442
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 446
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 447
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 449
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 453
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 457
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 458
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 460
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 461
color 0x39FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 466
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 470
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 472
color 0x6AFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 473
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 475
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 477
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 480
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 481
color 0x51FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 483
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 485
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 488
color 0x39FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 492
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 495
color 0x51FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Rescaled_EA_Highest_Freq and resi 498
color 0x004DFF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/nsp4_model_01_Rescaled_EA_Highest_Freq.pse, nsp4_model_01_Rescaled_EA_Highest_Freq, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/nsp4_model_01.pdb, nsp4_model_01_Normalized_Atom_SA
select to_keep, nsp4_model_01_Normalized_Atom_SA
select to_remove, nsp4_model_01_Normalized_Atom_SA and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, nsp4_model_01_Normalized_Atom_SA
color white, target_chain
delete target_chain
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 411+431
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 411+414+415+420+423+424+425+427+429+430+431+435+438+439+441+442+443+446+447+449+450+457+458+461+468+470+474+478+479+481+484+487+488+494
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 411+412+417+437+478+480+481+482
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 411+414+443
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 412+413+415+421+423+428+441+445+453+455+458+466+495+496+498+499
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 412+414+417+420+424+425+431+432+433+434+437+438+441+443+444+445+446+447+451+452+454+455+459+461+462+464+473+474+476+478+482+483+485+487+489+495+498
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 413+415+418+427+441+450+453+488+489+495
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 413+420+424+439+448+453+455+463+465+470+475+482+485+488+490+492+493
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 413+435
color 0x14FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 413+423+446+465
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 414+429+440+443+445+461+463+479+480+490+496+499
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 414+429+431+436+458+464+494
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 414+443+444+476
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 414
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 417+452+454+455+456+481+483
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 417+424+426+464+495
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 417+429+445+463+494+498+499
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 418+431+433+440+449+453+459+460+462+463+464+495+496
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 418+491+499
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 419+432+436+442+443+450+451+452+459+466+470+486+491+493
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 419+440+452
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 419+426+460+485
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 419+425+429+459+491+492
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 419+443+453+491
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 420+423+425+428+433+439+441+448+451+454+460+464+477+480+484
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 420+454+479+484+486
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 421+431+440+458+465+483+497
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 421+486
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 421+486
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 421+447+493+499
color 0x2CFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 423+470+496
color 0x00FF04, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 424+429+433+436+442+448+454+456+473+477+481+483+490+492+497
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 424+432+448+460
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 424+477+492
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 424+449+455
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 425+432+436+451+453+459
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 425+432+445+454+496
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 425+438+464+484+495
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 426+453+458+484+498
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 427+438+449+450
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 427+434+435+441+448+451+452+459+464+465+470+478+480+488+492+499
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 427+465+485+492
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 428+483+499
color 0x82FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 428
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 429+435+497
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 431+446+450+454+456+458+463+474+491
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 431+488
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 433+459+497
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 433
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 434+453+461
color 0x004DFF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 436+442+457+489+499
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 436
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 436
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 437+452+457+458+463+473+476
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 437+439+479
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 437
color 0x00FF4D, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 439+481
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 440+463
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 442+462+479+494
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 442+443+477
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 446
color 0x6AFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 449+461+493
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 450+495
color 0x51FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 452
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 453+470
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 453
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 455
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 456
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 457+477+491+494
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 457
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 460
color 0x8EFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 461+498
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 473+491
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 476+481+491
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 480
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 480+486
color 0x45FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 482
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 490+494
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 493
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 494
color 0xFF2400, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 496
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 498
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Normalized_Atom_SA and resi 499
color 0xFF4900, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/nsp4_model_01_Normalized_Atom_SA.pse, nsp4_model_01_Normalized_Atom_SA, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/nsp4_model_01.pdb, nsp4_model_01_Linear_Epitopes
select to_keep, nsp4_model_01_Linear_Epitopes
select to_remove, nsp4_model_01_Linear_Epitopes and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, nsp4_model_01_Linear_Epitopes
color white, target_chain
delete target_chain
select curr_residues, nsp4_model_01_Linear_Epitopes and resi 415
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Linear_Epitopes and resi 416+464
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Linear_Epitopes and resi 420+456+489+490
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Linear_Epitopes and resi 421+455
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Linear_Epitopes and resi 423
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Linear_Epitopes and resi 424
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Linear_Epitopes and resi 444
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Linear_Epitopes and resi 445
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Linear_Epitopes and resi 450
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Linear_Epitopes and resi 451
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Linear_Epitopes and resi 452
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Linear_Epitopes and resi 454+462
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Linear_Epitopes and resi 463
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Linear_Epitopes and resi 467
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Linear_Epitopes and resi 468
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Linear_Epitopes and resi 469
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Linear_Epitopes and resi 486
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Linear_Epitopes and resi 487
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Linear_Epitopes and resi 491
color 0xB3FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/nsp4_model_01_Linear_Epitopes.pse, nsp4_model_01_Linear_Epitopes, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/nsp4_model_01.pdb, nsp4_model_01_Structural_Epitopes_3A
select to_keep, nsp4_model_01_Structural_Epitopes_3A
select to_remove, nsp4_model_01_Structural_Epitopes_3A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, nsp4_model_01_Structural_Epitopes_3A
color white, target_chain
delete target_chain
select curr_residues, nsp4_model_01_Structural_Epitopes_3A and resi 420+456+489+490
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_3A and resi 421+455
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_3A and resi 423
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_3A and resi 424
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_3A and resi 451
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_3A and resi 452
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_3A and resi 454
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_3A and resi 463
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_3A and resi 486
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_3A and resi 487
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_3A and resi 491
color 0xB3FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/nsp4_model_01_Structural_Epitopes_3A.pse, nsp4_model_01_Structural_Epitopes_3A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/nsp4_model_01.pdb, nsp4_model_01_Structural_Epitopes_4A
select to_keep, nsp4_model_01_Structural_Epitopes_4A
select to_remove, nsp4_model_01_Structural_Epitopes_4A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, nsp4_model_01_Structural_Epitopes_4A
color white, target_chain
delete target_chain
select curr_residues, nsp4_model_01_Structural_Epitopes_4A and resi 412+451
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_4A and resi 420+456+489+490
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_4A and resi 421+455
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_4A and resi 423
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_4A and resi 424
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_4A and resi 444
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_4A and resi 448+450
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_4A and resi 452
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_4A and resi 454
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_4A and resi 463
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_4A and resi 464
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_4A and resi 468
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_4A and resi 474
color 0xFF2400, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_4A and resi 484
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_4A and resi 486
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_4A and resi 487
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_4A and resi 491
color 0xB3FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/nsp4_model_01_Structural_Epitopes_4A.pse, nsp4_model_01_Structural_Epitopes_4A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/nsp4_model_01.pdb, nsp4_model_01_Structural_Epitopes_5A
select to_keep, nsp4_model_01_Structural_Epitopes_5A
select to_remove, nsp4_model_01_Structural_Epitopes_5A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, nsp4_model_01_Structural_Epitopes_5A
color white, target_chain
delete target_chain
select curr_residues, nsp4_model_01_Structural_Epitopes_5A and resi 412+451
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_5A and resi 415+493
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_5A and resi 416+464
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_5A and resi 420+456+489+490
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_5A and resi 421+455
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_5A and resi 423
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_5A and resi 424
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_5A and resi 427
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_5A and resi 433
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_5A and resi 444
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_5A and resi 445
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_5A and resi 448+450
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_5A and resi 452
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_5A and resi 454+462
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_5A and resi 463
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_5A and resi 468
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_5A and resi 469
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_5A and resi 474
color 0xFF2400, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_5A and resi 484
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_5A and resi 486
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_5A and resi 487
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_5A and resi 491
color 0xB3FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/nsp4_model_01_Structural_Epitopes_5A.pse, nsp4_model_01_Structural_Epitopes_5A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/nsp4_model_01.pdb, nsp4_model_01_Structural_Epitopes_6A
select to_keep, nsp4_model_01_Structural_Epitopes_6A
select to_remove, nsp4_model_01_Structural_Epitopes_6A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, nsp4_model_01_Structural_Epitopes_6A
color white, target_chain
delete target_chain
select curr_residues, nsp4_model_01_Structural_Epitopes_6A and resi 412+451
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_6A and resi 415+493
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_6A and resi 416+464
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_6A and resi 420+456+489+490
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_6A and resi 421+455
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_6A and resi 423
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_6A and resi 424
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_6A and resi 427
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_6A and resi 433
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_6A and resi 444
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_6A and resi 445
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_6A and resi 448+450
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_6A and resi 452
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_6A and resi 454+462
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_6A and resi 463
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_6A and resi 468
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_6A and resi 469
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_6A and resi 474
color 0xFF2400, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_6A and resi 484
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_6A and resi 486
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_6A and resi 487
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_6A and resi 491
color 0xB3FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/nsp4_model_01_Structural_Epitopes_6A.pse, nsp4_model_01_Structural_Epitopes_6A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/nsp4_model_01.pdb, nsp4_model_01_Structural_Epitopes_7A
select to_keep, nsp4_model_01_Structural_Epitopes_7A
select to_remove, nsp4_model_01_Structural_Epitopes_7A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, nsp4_model_01_Structural_Epitopes_7A
color white, target_chain
delete target_chain
select curr_residues, nsp4_model_01_Structural_Epitopes_7A and resi 412+451
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7A and resi 415+493
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7A and resi 416+464
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7A and resi 420+456+489+490
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7A and resi 421+455
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7A and resi 423
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7A and resi 424
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7A and resi 427
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7A and resi 433
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7A and resi 444
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7A and resi 445
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7A and resi 448+450
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7A and resi 452
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7A and resi 454+462
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7A and resi 463
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7A and resi 468
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7A and resi 469
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7A and resi 474
color 0xFF2400, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7A and resi 484
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7A and resi 486
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7A and resi 487
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7A and resi 491
color 0xB3FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/nsp4_model_01_Structural_Epitopes_7A.pse, nsp4_model_01_Structural_Epitopes_7A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/nsp4_model_01.pdb, nsp4_model_01_Structural_Epitopes_7.5A
select to_keep, nsp4_model_01_Structural_Epitopes_7.5A
select to_remove, nsp4_model_01_Structural_Epitopes_7.5A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, nsp4_model_01_Structural_Epitopes_7.5A
color white, target_chain
delete target_chain
select curr_residues, nsp4_model_01_Structural_Epitopes_7.5A and resi 412+451
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7.5A and resi 415+493
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7.5A and resi 416+464
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7.5A and resi 420+456+489+490
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7.5A and resi 421+455
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7.5A and resi 423
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7.5A and resi 424+496
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7.5A and resi 427
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7.5A and resi 433
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7.5A and resi 444
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7.5A and resi 445
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7.5A and resi 448+450
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7.5A and resi 452
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7.5A and resi 454+462
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7.5A and resi 463
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7.5A and resi 468
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7.5A and resi 469
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7.5A and resi 474
color 0xFF2400, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7.5A and resi 484
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7.5A and resi 486
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7.5A and resi 487
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_7.5A and resi 491
color 0xB3FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/nsp4_model_01_Structural_Epitopes_7.5A.pse, nsp4_model_01_Structural_Epitopes_7.5A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/nsp4_model_01.pdb, nsp4_model_01_Structural_Epitopes_8A
select to_keep, nsp4_model_01_Structural_Epitopes_8A
select to_remove, nsp4_model_01_Structural_Epitopes_8A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, nsp4_model_01_Structural_Epitopes_8A
color white, target_chain
delete target_chain
select curr_residues, nsp4_model_01_Structural_Epitopes_8A and resi 412+451
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_8A and resi 415+493
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_8A and resi 416+464
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_8A and resi 420+456+489+490
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_8A and resi 421+455
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_8A and resi 423
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_8A and resi 424+496
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_8A and resi 427
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_8A and resi 433
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_8A and resi 444
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_8A and resi 445
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_8A and resi 448+450
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_8A and resi 452
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_8A and resi 454+462
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_8A and resi 463
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_8A and resi 468
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_8A and resi 469
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_8A and resi 474
color 0xFF2400, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_8A and resi 484
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_8A and resi 486
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_8A and resi 487
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, nsp4_model_01_Structural_Epitopes_8A and resi 491
color 0xB3FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/nsp4_model_01_Structural_Epitopes_8A.pse, nsp4_model_01_Structural_Epitopes_8A, -1, pse
set grid_mode, 1
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp4/structure/nsp4_model_01_combined.pse, nsp4_model_01_Normalized_Unique_Var_Count or nsp4_model_01_Normalized_Var_Count or nsp4_model_01_Normalized_Highest_Freq_Var_Count or nsp4_model_01_Inverse_ET or nsp4_model_01_Rescaled_EA_Highest_Freq or nsp4_model_01_Normalized_Atom_SA or nsp4_model_01_Linear_Epitopes or nsp4_model_01_Structural_Epitopes_3A or nsp4_model_01_Structural_Epitopes_4A or nsp4_model_01_Structural_Epitopes_5A or nsp4_model_01_Structural_Epitopes_6A or nsp4_model_01_Structural_Epitopes_7A or nsp4_model_01_Structural_Epitopes_7.5A or nsp4_model_01_Structural_Epitopes_8A, -1, pse
delete all