load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6yb7.pdb, 6yb7_Normalized_Unique_Var_Count
select to_keep, 6yb7_Normalized_Unique_Var_Count
select to_remove, 6yb7_Normalized_Unique_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6yb7_Normalized_Unique_Var_Count
color white, target_chain
delete target_chain
select curr_residues, 6yb7_Normalized_Unique_Var_Count and resi 1+6+7+15+17+24+37+43+46+48+52+60+70+71+88+90+92+99+105+108+121+132+142+157+178+184+188+191+194+196+213+223+234+236+247+259+260+261+264+274+284+285
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Unique_Var_Count and resi 8+9+13+18+20+21+23+25+45+47+49+50+51+55+61+62+65+67+68+72+75+78+80+81+82+83+84+87+89+93+94+100+101+103+106+110+111+112+114+116+120+122+123+125+127+129+130+134+135+143+144+145+153+160+162+165+166+168+169+170+171+173+174+186+189+190+195+198+199+201+206+209+212+215+216+220+222+225+226+227+228+232+235+237+239+243+244+245+246+248+249+251+252+254+255+256+257+263+266+267+273+279+280+281+282+283+288+293+298+300+301+302+304+305+306
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Unique_Var_Count and resi 33+35+69+96+152+156+193+224+276
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Unique_Var_Count and resi 241
color 0xFF0000, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp5/structure/6yb7_Normalized_Unique_Var_Count.pse, 6yb7_Normalized_Unique_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6yb7.pdb, 6yb7_Normalized_Var_Count
select to_keep, 6yb7_Normalized_Var_Count
select to_remove, 6yb7_Normalized_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6yb7_Normalized_Var_Count
color white, target_chain
delete target_chain
select curr_residues, 6yb7_Normalized_Var_Count and resi 1+6+7+8+17+21+46+47+50+60+67+70+88+92+93+94+121+125+142+156+157+162+178+188+190+196+224+235+239+241+244+246+247+259+276+279+301
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Var_Count and resi 15
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Var_Count and resi 45
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Var_Count and resi 61+96+129+184+193+234+236+255+285
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Var_Count and resi 71
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Var_Count and resi 75+80+132+260+274
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Var_Count and resi 89
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Var_Count and resi 90
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Var_Count and resi 108
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Var_Count and resi 191
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Var_Count and resi 220
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Var_Count and resi 248
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Var_Count and resi 254
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Var_Count and resi 266
color 0x6A00FF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp5/structure/6yb7_Normalized_Var_Count.pse, 6yb7_Normalized_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6yb7.pdb, 6yb7_Normalized_Highest_Freq_Var_Count
select to_keep, 6yb7_Normalized_Highest_Freq_Var_Count
select to_remove, 6yb7_Normalized_Highest_Freq_Var_Count and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6yb7_Normalized_Highest_Freq_Var_Count
color white, target_chain
delete target_chain
select curr_residues, 6yb7_Normalized_Highest_Freq_Var_Count and resi 1+6+8+21+46+47+50+60+67+70+88+93+94+96+121+125+156+157+162+178+184+190+193+196+235+239+241+244+246+247+279+301
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Highest_Freq_Var_Count and resi 15
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Highest_Freq_Var_Count and resi 45
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Highest_Freq_Var_Count and resi 61+129+132+234+236+255+285
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Highest_Freq_Var_Count and resi 71
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Highest_Freq_Var_Count and resi 75+80+260+274
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Highest_Freq_Var_Count and resi 89
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Highest_Freq_Var_Count and resi 90
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Highest_Freq_Var_Count and resi 108+266
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Highest_Freq_Var_Count and resi 191
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Highest_Freq_Var_Count and resi 220
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Highest_Freq_Var_Count and resi 248
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Highest_Freq_Var_Count and resi 254
color 0x8E00FF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp5/structure/6yb7_Normalized_Highest_Freq_Var_Count.pse, 6yb7_Normalized_Highest_Freq_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6yb7.pdb, 6yb7_Inverse_ET
select to_keep, 6yb7_Inverse_ET
select to_remove, 6yb7_Inverse_ET and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6yb7_Inverse_ET
color white, target_chain
delete target_chain
select curr_residues, 6yb7_Inverse_ET and resi 1+30+57
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 2+145+163
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 3+165+194
color 0x2CFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 4+61+129+238
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 5+188+255
color 0x00FF04, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 6+218+258
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 7+171+305
color 0x00FF4D, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 8+78+123
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 9+18+87
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 10+22+103
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 11+138+296
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 12+17+223+241
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 13+126+133
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 14+27+39+40+41+109+140+143+146+161+174+182+183+187
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 15+69+227
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 16+135+172
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 19+101+230
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 20+28+31+95+98+99+118+166+192+203+209+231
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 21+190+195
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 23+175+282
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 24+25+252
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 26+106+220
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 29+66+147
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 32+167+265
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 33+119+122+168
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 34+210+281
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 35+243+272
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 36+112+113+302
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 37+154+261
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 38+139+299
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 42+131+207
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 43+142+212
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 44+77+295
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 45+47+277
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 46+246
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 48+58+288
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 49+96+284
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 50+97+178
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 51+132+245
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 52+62+213
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 53+150+271
color 0x51FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 54+115+253
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 55+273+274
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 56+67+244
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 59+158+280
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 60+107+177
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 63+173+268
color 0x39FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 64+247+297
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 65+208+256
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 68+199+200
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 70+202+294
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 71+93+270
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 72+152+229+242
color 0x004DFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 73+104+226
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 74+196+260
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 75+114+164+214
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 76+105+291
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 79+111+239
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 80+248+249
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 81+224+228
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 82+124+169
color 0x6AFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 83+186+285
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 84+159+289
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 85+102+250+262
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 86+217+279
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 88+300
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 89+170+240
color 0x82FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 90+148+275
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 91+144+287
color 0xCBFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 92+176+267
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 94+134+198
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 100+225+232
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 108+155+191
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 110+263+266
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 116+189+290
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 117+197+278
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 120+149+179
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 121+180+235
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 125+181+185
color 0x45FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 127+276+303
color 0x14FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 128+141+234
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 130+204+293
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 136+157+257
color 0x76FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 137+151+215
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 153+222+264
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 156+286+304
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 160+254+301
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 162+201+298
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 184+259+269
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 193+221+236
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 205+216+251
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 206+211+283
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 219+237+306
color 0x8EFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Inverse_ET and resi 233+292
color 0xD8FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp5/structure/6yb7_Inverse_ET.pse, 6yb7_Inverse_ET, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6yb7.pdb, 6yb7_Rescaled_EA_Highest_Freq
select to_keep, 6yb7_Rescaled_EA_Highest_Freq
select to_remove, 6yb7_Rescaled_EA_Highest_Freq and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6yb7_Rescaled_EA_Highest_Freq
color white, target_chain
delete target_chain
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 1
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 6
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 7
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 8
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 9
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 13
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 15
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 17
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 18
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 20
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 21
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 23
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 24
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 25
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 33
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 35
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 37
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 43
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 45
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 46
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 47
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 48
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 49
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 50
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 51
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 52
color 0x76FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 55
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 60
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 61
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 62
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 65
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 67
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 68
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 69
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 70
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 71
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 72
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 75
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 78
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 80
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 81
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 82
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 83
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 84
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 87
color 0x2CFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 88
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 89
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 90
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 92
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 93
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 94
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 96
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 99
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 100
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 101
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 103
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 105
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 106
color 0x14FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 108
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 110
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 111
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 112
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 114
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 116
color 0x2CFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 120
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 121
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 122
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 123
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 125
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 127
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 129
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 130
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 132
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 134
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 135
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 142
color 0x00A3FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 143
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 144
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 145
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 152
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 153
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 156
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 157
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 160
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 162
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 165
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 166
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 168
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 169
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 170
color 0x76FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 171
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 173
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 174
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 178
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 184
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 186
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 188
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 189
color 0x8EFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 190
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 191
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 193
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 194
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 195
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 196
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 198
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 199
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 201
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 206
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 209
color 0x39FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 212
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 213
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 215
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 216
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 220
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 222
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 223
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 224
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 225
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 226
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 227
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 228
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 232
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 234
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 235
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 236
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 237
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 239
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 241
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 243
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 244
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 245
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 246
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 247
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 248
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 249
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 251
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 252
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 254
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 255
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 256
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 257
color 0xCBFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 259
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 260
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 261
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 263
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 264
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 266
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 267
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 273
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 274
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 276
color 0x08FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 279
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 280
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 281
color 0x00A3FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 282
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 283
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 284
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 285
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 288
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 293
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 298
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 300
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 301
color 0x51FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 302
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 304
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 305
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, 6yb7_Rescaled_EA_Highest_Freq and resi 306
color 0x20FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp5/structure/6yb7_Rescaled_EA_Highest_Freq.pse, 6yb7_Rescaled_EA_Highest_Freq, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6yb7.pdb, 6yb7_Normalized_Atom_SA
select to_keep, 6yb7_Normalized_Atom_SA
select to_remove, 6yb7_Normalized_Atom_SA and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6yb7_Normalized_Atom_SA
color white, target_chain
delete target_chain
select curr_residues, 6yb7_Normalized_Atom_SA and resi 1+232
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 1+12+47+59+65+76+96+106+118+126+133+134+183+187+190+192+213+216+217+223+224+225+229+239+244+252+263+270
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 1+3+5+6+8+9+12+15+18+21+22+24+32+33+34+41+43+49+51+52+54+57+59+61+67+70+75+77+80+82+87+90+91+93+97+98+103+104+108+114+120+122+123+124+126+127+130+131+132+136+137+143+151+153+167+168+170+172+173+174+176+177+178+179+182+187+190+194+200+202+205+209+214+215+217+218+219+220+226+228+232+233+234+235+236+237+238+245+252+253+256+257+258+261+262+263+266+267+271+272+284+288+289+292+293+294+295+298+299+302
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 1+65+92+102
color 0x00FF04, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 1+4+11+80+105+189
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 1+196+277
color 0xCBFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 2+3+4+6+7+8+26+44+45+46+48+52+53+56+57+58+60+63+67+69+75+77+82+83+84+91+92+97+99+103+107+108+118+126+127+135+137+140+144+145+154+165+167+170+176+177+180+182+184+185+186+189+191+192+198+201+212+215+217+225+228+229+231+232+236+241+247+248+253+255+263+269+270+275+282+287+288+289+290+293+298+300+302
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 2+5+81+98+169+223+269+306
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 2+12+34+48+53+58+63+70+90+97+104+109+115+118+123+126+127+140+141+151+152+153+154+165+167+172+192+193+194+214+218+223+229+243+254+257+260+273+275+287+291+298+301
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 2+4+50+79+97+137+143+237+241+259+273+279+303
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 3+6+26+46+47+67+71+73+81+82+88+90+97+104+131+132+133+139+141+165+169+176+181+183+190+217+219+224+227+228+235+236+240+243+248+257+261+273+277+279+280+286+291+294+299+301+305
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 3+35+64+139+142+153+213+222+237+241
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 4+5+7+11+12+21+48+49+55+78+90+92+100+102+105+116+118+123+131+178+180+191+196+197+218+222+225+239+240+276+286+290+304+306
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 4+5+25+51+60+76+105+123+154+227+244+251+270+288+294
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 4+9+24+25+45+58+60+75+84+97+110+143+156+217+226+232+235+236
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 4
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 4+76+222
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 5+52+74+108+122+221+224+228+274+279+299
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 5+26+47+76+83+102+107+165+194+227+243+245+272+274+282+286+288+304
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 6+8+9+14+23+25+27+45+53+54+55+57+62+64+65+76+83+84+93+98+101+102+104+105+110+121+126+131+138+139+141+142+151+181+183+189+217+221+222+223+238+247+257+260+274+276+293+295+300+305
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 6+70+71+92+119+198+217+231+238+287+288+289
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 6+8+14+19+27+31+35+37+41+51+52+53+57+65+73+79+80+83+92+95+99+108+119+122+123+124+134+137+141+152+155+161+166+171+185+188+189+192+197+199+202+203+221+223+229+236+237+245+249+258+259+262+263+266+267+274+276+278+279+284+286+289+291+295+297+298+299+304
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 6+9+10+11+22+34+45+54+55+61+65+66+72+74+76+77+80+99+100+102+107+110+118+125+133+163+166+180+189+218+220+227+235+241+244+251+256+261+262+274+276+277+279+288+291+295+300+303+306
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 6+12+55+64+107+125+199+218+255+256+273+283+302
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 6+37+50+64+121+180+221+274
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 6+33+51+60+69+93+124+134+189+193+215+218+236+246+275
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 7+19+26+60+80+81+97+215+238+248
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 7+23+46+55+88+94+103+110+122+127+152+168+178+181+186+193+195+196+223+228+236+252+283
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 9
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 9+67+78+154+190+195+248+301+303+306
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 10+55+64+77+103+186+202+246+277
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 11+33+47+100+104+121+154+216+220+233+254
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 12+59+82+154+183+197+237+279
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 14+17+21+47+90+102+151+155+166+220+272+284+306
color 0x004DFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 14+15+31+72+76+83+84+95+97+101+106+110+118+185+190+198+236+246+256+259+273+276+277+285+287+298+301
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 14+53+178+304
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 14+49+64+74+82+158+217+237
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 15+43+46+62+63+64+70+74+76+94+96+99+103+137+142+154+169+195+221+236+255+269+306
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 19+26+51+56+101+105+118+137+154+240+249+256+282
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 23+78+244
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 23+40+184+244
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 24+58+60+64+69+78+82+84+88+101+104+105+106+108+123+127+132+133+142+154+155+164+169+195+207+213+219+223+251+259+261+279+280+282+284+287+294+295+298+299+300+304+305
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 24+33+41+44+50+55+56+60+98+103+110+119+141+142+151+153+158+181+188+191+192+196+212+224+231+238+242+248+249+256+262+271+277+282+290+293+294
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 24+256+278
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 24+193
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 24+59+74+101+166+197+214+217+220+244+277
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 31+34+80+97+101+110+168+184+200+222+232+278+294+298
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 33+34+56+102+180+238+294+303
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 40+120+126+134+155+156+188+189+196+218+229+249+263+290
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 41+140+166+222+223+231+236+270+285+297
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 45+255
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 46+59+72+73+100+119+258+263+278+304
color 0x51FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 46+84+241
color 0x6AFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 47+186
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 47+245
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 48+56+63+122+168+273+280
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 50+166+285
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 51+72+90+141+224+235
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 53+60+78+85+105+170+171+286
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 55+102+240+252+283
color 0x76FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 55+96+217+249+279+294
color 0x14FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 57+71+121+188+274
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 59+72+123+134+138+142+184+223+238+258+294
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 60+142+189+243
color 0x82FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 60+153+235
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 61+75+119+184+190+214+217+218+222+226+239+245+305
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 61+300
color 0x45FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 62+260+286
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 64+90+92+222
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 67+73
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 72+74+170+236+247+252+302
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 76+107+232+297
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 83+93+100+107+222+228+301
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 88+153+168
color 0x39FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 94+217+222+262
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 96+245
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 96+191+194+213+257+298+306
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 97+228
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 97
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 100+126+145
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 103+104+108+119+137+216
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 105+132+221+235+248+256
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 110+168+229
color 0x00FF4D, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 123+125+178+184+188+305
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 137+286
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 139
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 141
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 142+226
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 169
color 0xFF0C00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 191
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, 6yb7_Normalized_Atom_SA and resi 236
color 0x8EFF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp5/structure/6yb7_Normalized_Atom_SA.pse, 6yb7_Normalized_Atom_SA, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6yb7.pdb, 6yb7_Linear_Epitopes
select to_keep, 6yb7_Linear_Epitopes
select to_remove, 6yb7_Linear_Epitopes and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6yb7_Linear_Epitopes
color white, target_chain
delete target_chain
select curr_residues, 6yb7_Linear_Epitopes and resi 10
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Linear_Epitopes and resi 11+138+296
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6yb7_Linear_Epitopes and resi 27+39+40+41+140+146+182+183
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 6yb7_Linear_Epitopes and resi 28+31
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6yb7_Linear_Epitopes and resi 29+147
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Linear_Epitopes and resi 32
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 6yb7_Linear_Epitopes and resi 38+139
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 6yb7_Linear_Epitopes and resi 42
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Linear_Epitopes and resi 141
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Linear_Epitopes and resi 163
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6yb7_Linear_Epitopes and resi 164
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Linear_Epitopes and resi 210
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Linear_Epitopes and resi 211
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 6yb7_Linear_Epitopes and resi 289
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6yb7_Linear_Epitopes and resi 290
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6yb7_Linear_Epitopes and resi 295
color 0xF0FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp5/structure/6yb7_Linear_Epitopes.pse, 6yb7_Linear_Epitopes, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6yb7.pdb, 6yb7_Structural_Epitopes_3A
select to_keep, 6yb7_Structural_Epitopes_3A
select to_remove, 6yb7_Structural_Epitopes_3A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6yb7_Structural_Epitopes_3A
color white, target_chain
delete target_chain
select curr_residues, 6yb7_Structural_Epitopes_3A and resi 2
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_3A and resi 10
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_3A and resi 11+138
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_3A and resi 14+40+41+140+187
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_3A and resi 95+98
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_3A and resi 131
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_3A and resi 139+299
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_3A and resi 141
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_3A and resi 164+214
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_3A and resi 289
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_3A and resi 290
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_3A and resi 295
color 0xF0FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp5/structure/6yb7_Structural_Epitopes_3A.pse, 6yb7_Structural_Epitopes_3A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6yb7.pdb, 6yb7_Structural_Epitopes_4A
select to_keep, 6yb7_Structural_Epitopes_4A
select to_remove, 6yb7_Structural_Epitopes_4A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6yb7_Structural_Epitopes_4A
color white, target_chain
delete target_chain
select curr_residues, 6yb7_Structural_Epitopes_4A and resi 2+163
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_4A and resi 10+22
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_4A and resi 11+138
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_4A and resi 14+27+40+41+109+140+182+183+187
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_4A and resi 31+95+98+118+192+203
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_4A and resi 32+167
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_4A and resi 34
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_4A and resi 42+131
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_4A and resi 44+77+295
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_4A and resi 54
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_4A and resi 66
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_4A and resi 91+287
color 0xCBFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_4A and resi 128+141
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_4A and resi 139+299
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_4A and resi 164+214
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_4A and resi 172
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_4A and resi 289
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_4A and resi 290
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_4A and resi 292
color 0xD8FF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp5/structure/6yb7_Structural_Epitopes_4A.pse, 6yb7_Structural_Epitopes_4A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6yb7.pdb, 6yb7_Structural_Epitopes_5A
select to_keep, 6yb7_Structural_Epitopes_5A
select to_remove, 6yb7_Structural_Epitopes_5A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6yb7_Structural_Epitopes_5A
color white, target_chain
delete target_chain
select curr_residues, 6yb7_Structural_Epitopes_5A and resi 2+163
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_5A and resi 10+22
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_5A and resi 11+138
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_5A and resi 14+27+40+41+109+140+161+182+183+187
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_5A and resi 16+172
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_5A and resi 31+95+98+118+192+203+231
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_5A and resi 32+167
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_5A and resi 34
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_5A and resi 42+131
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_5A and resi 44+77+295
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_5A and resi 54+115
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_5A and resi 66+147
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_5A and resi 91+287
color 0xCBFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_5A and resi 128+141
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_5A and resi 139+299
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_5A and resi 164+214
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_5A and resi 233+292
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_5A and resi 289
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_5A and resi 290
color 0xFFE800, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp5/structure/6yb7_Structural_Epitopes_5A.pse, 6yb7_Structural_Epitopes_5A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6yb7.pdb, 6yb7_Structural_Epitopes_6A
select to_keep, 6yb7_Structural_Epitopes_6A
select to_remove, 6yb7_Structural_Epitopes_6A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6yb7_Structural_Epitopes_6A
color white, target_chain
delete target_chain
select curr_residues, 6yb7_Structural_Epitopes_6A and resi 2+163
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_6A and resi 10+22
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_6A and resi 11+138
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_6A and resi 14+27+40+41+109+140+161+182+183+187
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_6A and resi 16+172
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_6A and resi 31+95+98+118+192+203+231
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_6A and resi 32+167
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_6A and resi 34
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_6A and resi 42+131
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_6A and resi 44+77+295
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_6A and resi 54+115
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_6A and resi 66+147
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_6A and resi 91+287
color 0xCBFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_6A and resi 128+141
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_6A and resi 133
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_6A and resi 139+299
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_6A and resi 164+214
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_6A and resi 233+292
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_6A and resi 289
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_6A and resi 290
color 0xFFE800, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp5/structure/6yb7_Structural_Epitopes_6A.pse, 6yb7_Structural_Epitopes_6A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6yb7.pdb, 6yb7_Structural_Epitopes_7A
select to_keep, 6yb7_Structural_Epitopes_7A
select to_remove, 6yb7_Structural_Epitopes_7A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6yb7_Structural_Epitopes_7A
color white, target_chain
delete target_chain
select curr_residues, 6yb7_Structural_Epitopes_7A and resi 2+163
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7A and resi 10+22
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7A and resi 11+138
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7A and resi 14+27+40+41+109+140+161+182+183+187
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7A and resi 16+172
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7A and resi 31+95+98+118+192+203+231
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7A and resi 32+167
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7A and resi 34
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7A and resi 42+131+207
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7A and resi 44+77+295
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7A and resi 54+115
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7A and resi 66+147
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7A and resi 91+287
color 0xCBFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7A and resi 128+141
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7A and resi 133
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7A and resi 139+299
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7A and resi 164+214
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7A and resi 179
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7A and resi 233+292
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7A and resi 289
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7A and resi 290
color 0xFFE800, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp5/structure/6yb7_Structural_Epitopes_7A.pse, 6yb7_Structural_Epitopes_7A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6yb7.pdb, 6yb7_Structural_Epitopes_7.5A
select to_keep, 6yb7_Structural_Epitopes_7.5A
select to_remove, 6yb7_Structural_Epitopes_7.5A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6yb7_Structural_Epitopes_7.5A
color white, target_chain
delete target_chain
select curr_residues, 6yb7_Structural_Epitopes_7.5A and resi 2+163
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7.5A and resi 10+22
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7.5A and resi 11+138
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7.5A and resi 14+27+40+41+109+140+161+182+183+187
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7.5A and resi 16+172
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7.5A and resi 31+95+98+118+192+203+231
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7.5A and resi 32+167
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7.5A and resi 34
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7.5A and resi 42+131+207
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7.5A and resi 44+77+295
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7.5A and resi 54+115
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7.5A and resi 66+147
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7.5A and resi 91+287
color 0xCBFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7.5A and resi 128+141
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7.5A and resi 133
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7.5A and resi 139+299
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7.5A and resi 159+289
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7.5A and resi 164+214
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7.5A and resi 179
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7.5A and resi 233+292
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_7.5A and resi 290
color 0xFFE800, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp5/structure/6yb7_Structural_Epitopes_7.5A.pse, 6yb7_Structural_Epitopes_7.5A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6yb7.pdb, 6yb7_Structural_Epitopes_8A
select to_keep, 6yb7_Structural_Epitopes_8A
select to_remove, 6yb7_Structural_Epitopes_8A and (not to_keep)
remove to_remove
delete to_keep
delete to_remove
select target_chain, 6yb7_Structural_Epitopes_8A
color white, target_chain
delete target_chain
select curr_residues, 6yb7_Structural_Epitopes_8A and resi 2+163
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_8A and resi 10+22
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_8A and resi 11+138
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_8A and resi 14+27+40+41+109+140+161+182+183+187
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_8A and resi 16+172
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_8A and resi 31+95+98+118+192+203+231
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_8A and resi 32+167
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_8A and resi 34
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_8A and resi 42+131+207
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_8A and resi 44+77+295
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_8A and resi 54+115+253
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_8A and resi 66+147
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_8A and resi 91+287
color 0xCBFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_8A and resi 128+141
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_8A and resi 133
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_8A and resi 139+299
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_8A and resi 159+289
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_8A and resi 164+214
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_8A and resi 179
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_8A and resi 233+292
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6yb7_Structural_Epitopes_8A and resi 290
color 0xFFE800, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp5/structure/6yb7_Structural_Epitopes_8A.pse, 6yb7_Structural_Epitopes_8A, -1, pse
set grid_mode, 1
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp5/structure/6yb7_combined.pse, 6yb7_Normalized_Unique_Var_Count or 6yb7_Normalized_Var_Count or 6yb7_Normalized_Highest_Freq_Var_Count or 6yb7_Inverse_ET or 6yb7_Rescaled_EA_Highest_Freq or 6yb7_Normalized_Atom_SA or 6yb7_Linear_Epitopes or 6yb7_Structural_Epitopes_3A or 6yb7_Structural_Epitopes_4A or 6yb7_Structural_Epitopes_5A or 6yb7_Structural_Epitopes_6A or 6yb7_Structural_Epitopes_7A or 6yb7_Structural_Epitopes_7.5A or 6yb7_Structural_Epitopes_8A, -1, pse
delete all