load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6xip.pdb, 6xip_Normalized_Unique_Var_Count
select target_chain, 6xip_Normalized_Unique_Var_Count and (chain A or chain C)
color white, 6xip_Normalized_Unique_Var_Count
delete target_chain
select curr_residues, 6xip_Normalized_Unique_Var_Count and (chain A or chain C) and resi 2+3+26+30+33+40+45+52+56+68
color 0x76FF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Unique_Var_Count and (chain A or chain C) and resi 6+7+9+10+12+13+14+15+16+17+18+20+21+22+25+31+32+34+39+42+46+47+48+49+50+54+55+60+65+66+67+69+70
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Unique_Var_Count and (chain A or chain C) and resi 58+62
color 0xFF0000, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/6xip_Normalized_Unique_Var_Count.pse, 6xip_Normalized_Unique_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6xip.pdb, 6xip_Normalized_Var_Count
select target_chain, 6xip_Normalized_Var_Count and (chain A or chain C)
color white, 6xip_Normalized_Var_Count
delete target_chain
select curr_residues, 6xip_Normalized_Var_Count and (chain A or chain C) and resi 3+15+26+30+31+50+56+58+62+70
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Var_Count and (chain A or chain C) and resi 25
color 0xFF0000, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/6xip_Normalized_Var_Count.pse, 6xip_Normalized_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6xip.pdb, 6xip_Normalized_Highest_Freq_Var_Count
select target_chain, 6xip_Normalized_Highest_Freq_Var_Count and (chain A or chain C)
color white, 6xip_Normalized_Highest_Freq_Var_Count
delete target_chain
select curr_residues, 6xip_Normalized_Highest_Freq_Var_Count and (chain A or chain C) and resi 3+15+26+30+31+50+56+70
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Highest_Freq_Var_Count and (chain A or chain C) and resi 25
color 0xFF0000, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/6xip_Normalized_Highest_Freq_Var_Count.pse, 6xip_Normalized_Highest_Freq_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6xip.pdb, 6xip_Inverse_ET
select target_chain, 6xip_Inverse_ET and (chain A or chain C)
color white, 6xip_Inverse_ET
delete target_chain
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 1
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 2
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 3
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 4
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 5
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 6
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 7
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 8
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 9
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 10
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 11
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 12
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 13
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 14
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 15
color 0x45FF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 16
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 17+36+37
color 0xFF2400, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 18
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 19
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 20
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 21
color 0x6AFF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 22
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 23
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 24
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 25
color 0x8EFF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 26
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 27
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 28
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 29
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 30
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 31
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 32
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 33
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 34
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 35
color 0x00FF4D, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 38
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 39
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 40
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 41
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 42
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 43
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 44
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 45
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 46
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 47
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 48
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 49
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 50
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 51
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 52
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 53
color 0x51FF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 54
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 55
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 56
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 57
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 58
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 59
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 60
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 61
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 62
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 63
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 64
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 65
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 66
color 0x00FFD4, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 67
color 0x14FF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 68
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 69
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Inverse_ET and (chain A or chain C) and resi 70
color 0x8E00FF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/6xip_Inverse_ET.pse, 6xip_Inverse_ET, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6xip.pdb, 6xip_Rescaled_EA_Highest_Freq
select target_chain, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C)
color white, 6xip_Rescaled_EA_Highest_Freq
delete target_chain
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 2
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 3
color 0x00FF4D, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 6
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 7
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 9
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 10
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 12
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 13
color 0xFF1800, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 14
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 15
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 16
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 17
color 0x8EFF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 18
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 20
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 21
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 22
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 25
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 26
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 30
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 31
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 32
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 33
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 34
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 39
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 40
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 42
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 45
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 46
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 47
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 48
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 49
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 50
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 52
color 0x00FF4D, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 54
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 55
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 56
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 58
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 60
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 62
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 65
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 66
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 67
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 68
color 0x00A3FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 69
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Rescaled_EA_Highest_Freq and (chain A or chain C) and resi 70
color 0xB300FF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/6xip_Rescaled_EA_Highest_Freq.pse, 6xip_Rescaled_EA_Highest_Freq, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6xip.pdb, 6xip_Normalized_Atom_SA
select target_chain, 6xip_Normalized_Atom_SA and (chain A or chain C)
color white, 6xip_Normalized_Atom_SA
delete target_chain
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi -1+30+46
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi -1+0+4+5+13+26+30+31+34+43+50+57+62+66+67+69
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi -1+4+26+63+70
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi -1+2+3+4+18+23+31+37+46+47+62+63+66
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi -1+18
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi -1+24
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 0+11+13+22+24+27+35+47+53+54+68
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 0+4+5+7+8+9+14+15+16+18+20+23+27+30+37+38+41+49+50+52+56+60+63+70
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 0
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 1+6+20+21+22+28+53
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 1+6+11+16+19+27+38+44+46+49+50+54+58
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 1
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 1+5+9+54
color 0x00FF04, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 2+4+5+6+8+9+13+14+15+16+19+20+21+24+26+29+31+34+37+38+45+47+51+52+53+57+59+62+67
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 2+8+19+37+51+67+68
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 2+5+52
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 2+37+68
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 2
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 3+19+37+49+64
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 3+23+29+38+42+49+61+65
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 4+15+19+29+62
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 4+49
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 5+28+50
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 6+9+12+19+31+33+38+41+44+46+49+58+59+62+63+64+66+67+68
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 7+21+23+25+26+31+34+36+43+47
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 7+21+40+49+62+66
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 7+21
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 8+33+52
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 8
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 9+43+64
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 11+69
color 0xCBFF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 11
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 12+34+68
color 0x39FF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 12
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 14+36+61+68+69
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 15+70
color 0x00FF4D, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 16+18+27+35+51+58+68+70
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 16+27
color 0x14FF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 18+44+57
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 18+27+43+60+70
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 19
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 19+31+53
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 20+21+28+31+40+66
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 20+25+31+57+61
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 21+23+35+65
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 21+50+63+70
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 21
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 21
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 23+41
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 23+51+60+63
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 24
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 24+26+33+43+46+47+64
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 24+50
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 25
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 27+45
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 27+53
color 0x82FF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 28+29+30+54
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 34+50+65+67
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 34+61
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 38+40+59+63
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 40+50
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 41
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 41
color 0xFFF400, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 41
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 43+60
color 0x004DFF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 43
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 44
color 0x76FF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 49+56+60+63+66
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 56
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 63
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 67
color 0x6AFF00, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 67
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 69
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, 6xip_Normalized_Atom_SA and (chain A or chain C) and resi 70
color 0x8EFF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/6xip_Normalized_Atom_SA.pse, 6xip_Normalized_Atom_SA, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6xip.pdb, 6xip_Linear_Epitopes
select target_chain, 6xip_Linear_Epitopes and (chain A or chain C)
color white, 6xip_Linear_Epitopes
delete target_chain
select curr_residues, 6xip_Linear_Epitopes and (chain A or chain C) and resi 36+37
color 0xFF2400, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/6xip_Linear_Epitopes.pse, 6xip_Linear_Epitopes, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6xip.pdb, 6xip_Structural_Epitopes_3A
select target_chain, 6xip_Structural_Epitopes_3A and (chain A or chain C)
color white, 6xip_Structural_Epitopes_3A
delete target_chain
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/6xip_Structural_Epitopes_3A.pse, 6xip_Structural_Epitopes_3A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6xip.pdb, 6xip_Structural_Epitopes_4A
select target_chain, 6xip_Structural_Epitopes_4A and (chain A or chain C)
color white, 6xip_Structural_Epitopes_4A
delete target_chain
select curr_residues, 6xip_Structural_Epitopes_4A and (chain A or chain C) and resi 8
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6xip_Structural_Epitopes_4A and (chain A or chain C) and resi 11
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 6xip_Structural_Epitopes_4A and (chain A or chain C) and resi 36+37
color 0xFF2400, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/6xip_Structural_Epitopes_4A.pse, 6xip_Structural_Epitopes_4A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6xip.pdb, 6xip_Structural_Epitopes_5A
select target_chain, 6xip_Structural_Epitopes_5A and (chain A or chain C)
color white, 6xip_Structural_Epitopes_5A
delete target_chain
select curr_residues, 6xip_Structural_Epitopes_5A and (chain A or chain C) and resi 8
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6xip_Structural_Epitopes_5A and (chain A or chain C) and resi 11
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 6xip_Structural_Epitopes_5A and (chain A or chain C) and resi 36+37
color 0xFF2400, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/6xip_Structural_Epitopes_5A.pse, 6xip_Structural_Epitopes_5A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6xip.pdb, 6xip_Structural_Epitopes_6A
select target_chain, 6xip_Structural_Epitopes_6A and (chain A or chain C)
color white, 6xip_Structural_Epitopes_6A
delete target_chain
select curr_residues, 6xip_Structural_Epitopes_6A and (chain A or chain C) and resi 8
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6xip_Structural_Epitopes_6A and (chain A or chain C) and resi 11
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 6xip_Structural_Epitopes_6A and (chain A or chain C) and resi 36+37
color 0xFF2400, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/6xip_Structural_Epitopes_6A.pse, 6xip_Structural_Epitopes_6A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6xip.pdb, 6xip_Structural_Epitopes_7A
select target_chain, 6xip_Structural_Epitopes_7A and (chain A or chain C)
color white, 6xip_Structural_Epitopes_7A
delete target_chain
select curr_residues, 6xip_Structural_Epitopes_7A and (chain A or chain C) and resi 8
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6xip_Structural_Epitopes_7A and (chain A or chain C) and resi 11
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 6xip_Structural_Epitopes_7A and (chain A or chain C) and resi 36+37
color 0xFF2400, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/6xip_Structural_Epitopes_7A.pse, 6xip_Structural_Epitopes_7A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6xip.pdb, 6xip_Structural_Epitopes_7.5A
select target_chain, 6xip_Structural_Epitopes_7.5A and (chain A or chain C)
color white, 6xip_Structural_Epitopes_7.5A
delete target_chain
select curr_residues, 6xip_Structural_Epitopes_7.5A and (chain A or chain C) and resi 8
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6xip_Structural_Epitopes_7.5A and (chain A or chain C) and resi 11
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 6xip_Structural_Epitopes_7.5A and (chain A or chain C) and resi 36+37
color 0xFF2400, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/6xip_Structural_Epitopes_7.5A.pse, 6xip_Structural_Epitopes_7.5A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full//Shared/PDBs/6xip.pdb, 6xip_Structural_Epitopes_8A
select target_chain, 6xip_Structural_Epitopes_8A and (chain A or chain C)
color white, 6xip_Structural_Epitopes_8A
delete target_chain
select curr_residues, 6xip_Structural_Epitopes_8A and (chain A or chain C) and resi 8
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 6xip_Structural_Epitopes_8A and (chain A or chain C) and resi 11
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 6xip_Structural_Epitopes_8A and (chain A or chain C) and resi 29
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 6xip_Structural_Epitopes_8A and (chain A or chain C) and resi 36+37
color 0xFF2400, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/6xip_Structural_Epitopes_8A.pse, 6xip_Structural_Epitopes_8A, -1, pse
set grid_mode, 1
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/6xip_combined.pse, 6xip_Normalized_Unique_Var_Count or 6xip_Normalized_Var_Count or 6xip_Normalized_Highest_Freq_Var_Count or 6xip_Inverse_ET or 6xip_Rescaled_EA_Highest_Freq or 6xip_Normalized_Atom_SA or 6xip_Linear_Epitopes or 6xip_Structural_Epitopes_3A or 6xip_Structural_Epitopes_4A or 6xip_Structural_Epitopes_5A or 6xip_Structural_Epitopes_6A or 6xip_Structural_Epitopes_7A or 6xip_Structural_Epitopes_7.5A or 6xip_Structural_Epitopes_8A, -1, pse
delete all