load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/7bv1.pdb, 7bv1_Normalized_Unique_Var_Count
select target_chain, 7bv1_Normalized_Unique_Var_Count and chain C
color white, 7bv1_Normalized_Unique_Var_Count
delete target_chain
select curr_residues, 7bv1_Normalized_Unique_Var_Count and chain C and resi 2+3+26+30+33+40+45+52+56
color 0x76FF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Unique_Var_Count and chain C and resi 6+7+9+10+12+13+14+15+16+17+18+20+21+22+25+31+32+34+39+42+46+47+48+49+50+54+55+60
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Unique_Var_Count and chain C and resi 58+62
color 0xFF0000, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/7bv1_Normalized_Unique_Var_Count.pse, 7bv1_Normalized_Unique_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/7bv1.pdb, 7bv1_Normalized_Var_Count
select target_chain, 7bv1_Normalized_Var_Count and chain C
color white, 7bv1_Normalized_Var_Count
delete target_chain
select curr_residues, 7bv1_Normalized_Var_Count and chain C and resi 3+15+26+30+31+50+56+58+62
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Var_Count and chain C and resi 25
color 0xFF0000, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/7bv1_Normalized_Var_Count.pse, 7bv1_Normalized_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/7bv1.pdb, 7bv1_Normalized_Highest_Freq_Var_Count
select target_chain, 7bv1_Normalized_Highest_Freq_Var_Count and chain C
color white, 7bv1_Normalized_Highest_Freq_Var_Count
delete target_chain
select curr_residues, 7bv1_Normalized_Highest_Freq_Var_Count and chain C and resi 3+15+26+30+31+50+56
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Highest_Freq_Var_Count and chain C and resi 25
color 0xFF0000, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/7bv1_Normalized_Highest_Freq_Var_Count.pse, 7bv1_Normalized_Highest_Freq_Var_Count, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/7bv1.pdb, 7bv1_Inverse_ET
select target_chain, 7bv1_Inverse_ET and chain C
color white, 7bv1_Inverse_ET
delete target_chain
select curr_residues, 7bv1_Inverse_ET and chain C and resi 2
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 3
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 4
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 5
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 6
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 7
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 8
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 9
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 10
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 11
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 12
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 13
color 0xFF3000, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 14
color 0xBFFF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 15
color 0x45FF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 16
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 17+36+37
color 0xFF2400, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 18
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 19
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 20
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 21
color 0x6AFF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 22
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 23
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 24
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 25
color 0x8EFF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 26
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 27
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 28
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 29
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 30
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 31
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 32
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 33
color 0xFF6E00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 34
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 35
color 0x00FF4D, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 38
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 39
color 0xFF5500, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 40
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 41
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 42
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 43
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 44
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 45
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 46
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 47
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 48
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 49
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 50
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 51
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 52
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 53
color 0x51FF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 54
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 55
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 56
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 57
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 58
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 59
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 60
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 61
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 62
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 63
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, 7bv1_Inverse_ET and chain C and resi 64
color 0x00F8FF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/7bv1_Inverse_ET.pse, 7bv1_Inverse_ET, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/7bv1.pdb, 7bv1_Rescaled_EA_Highest_Freq
select target_chain, 7bv1_Rescaled_EA_Highest_Freq and chain C
color white, 7bv1_Rescaled_EA_Highest_Freq
delete target_chain
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 2
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 3
color 0x00FF4D, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 6
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 7
color 0x00FF41, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 9
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 10
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 12
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 13
color 0xFF1800, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 14
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 15
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 16
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 17
color 0x8EFF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 18
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 20
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 21
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 22
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 25
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 26
color 0xFCFF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 30
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 31
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 32
color 0xFFE800, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 33
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 34
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 39
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 40
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 42
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 45
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 46
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 47
color 0xBF00FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 48
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 49
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 50
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 52
color 0x00FF4D, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 54
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 55
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 56
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 58
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 60
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Rescaled_EA_Highest_Freq and chain C and resi 62
color 0x2000FF, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/7bv1_Rescaled_EA_Highest_Freq.pse, 7bv1_Rescaled_EA_Highest_Freq, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/7bv1.pdb, 7bv1_Normalized_Atom_SA
select target_chain, 7bv1_Normalized_Atom_SA and chain C
color white, 7bv1_Normalized_Atom_SA
delete target_chain
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 2
color 0xCBFF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 2+6+11+23+36+38+52+54+58+62
color 0x6A00FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 2
color 0x00FF96, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 2+23
color 0x0010FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 2
color 0x007EFF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 2+19+29+31
color 0x00C7FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 2
color 0xFFD000, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 3+4+13+27+31+44+45+54+58+59
color 0x8200FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 3+4+5+8+9+12+14+15+22+23+24+26+27+28+31+37+38+41+50+51+52+58+60
color 0xA700FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 3+5+6+7+12+16+17+19+22+24+25+28+29+31+32+35+37+38+39+44+45+46+49+56+57+58+61+62
color 0xB300FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 3+11+28+40+58
color 0x00E0FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 3+7+23+37
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 4+15+21+26+30+31+42+44
color 0x5100FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 4+9+21+54
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 4+63
color 0x51FF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 5+6+11+13+14+16+30+36+41+56+60+63
color 0x9B00FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 5
color 0x00FF59, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 5+18+26+29+34
color 0x3900FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 5+64
color 0x00FF35, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 7+14+21+22+28+34+43+47+53+57+64
color 0x7600FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 7+13+16+18+24+41+46+50+61+63
color 0x2C00FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 8+12+13+18+19+20+25+43+49+51+53
color 0x8E00FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 8+49+60
color 0x0028FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 8+27+41+44+45
color 0x00BBFF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 8
color 0xFF8600, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 9+21+26+27+43+61
color 0x00FF1C, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 11
color 0xFFB700, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 12+35+45+49
color 0x001CFF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 12+38
color 0x00FFA3, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 12
color 0xFFAB00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 14+40
color 0x0035FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 15+20+21+46+49+54+57
color 0x004DFF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 15
color 0x00FF28, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 16+45
color 0x0800FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 16
color 0xD8FF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 18+19+26+27+37+38+43+46
color 0x5D00FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 18
color 0x76FF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 18+44
color 0x0096FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 19+43+62
color 0x008AFF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 19+20+23+30+33+41+47+63
color 0x4500FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 19
color 0x9BFF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 19+30+37
color 0xA7FF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 20+21+28
color 0x00FFE0, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 21
color 0x0066FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 21+60
color 0x39FF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 23+64
color 0x00F8FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 23
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 24+59
color 0x00FF7E, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 24+31
color 0x00FFBB, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 24
color 0x00FF10, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 25+33+59+62
color 0x2000FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 25+27+51
color 0x00ECFF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 25+34+63
color 0x00FFAF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 26+31
color 0xE4FF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 27
color 0xFF0000, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 29+35+47+63
color 0x00FFEC, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 29+61
color 0x00FFF8, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 33
color 0x00FF8A, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 34
color 0x00FF66, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 34
color 0xFF9200, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 36+46+50+51
color 0x0072FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 37+47+52+62
color 0x0059FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 38
color 0x00FF4D, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 40
color 0x0004FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 40
color 0x00FF72, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 41
color 0xFF6100, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 41
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 43+44+56+60
color 0x00D4FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 43
color 0x20FF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 43+57
color 0x8EFF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 46
color 0xFFC300, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 47+53
color 0xF0FF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 49
color 0x0041FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 49+63
color 0x00FFC7, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 50+64
color 0x5DFF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 51
color 0x00AFFF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 52+59+62
color 0x1400FF, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 53
color 0xB3FF00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 56+63
color 0xFF3D00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 60
color 0xFF9F00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Normalized_Atom_SA and chain C and resi 61
color 0x2CFF00, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/7bv1_Normalized_Atom_SA.pse, 7bv1_Normalized_Atom_SA, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/7bv1.pdb, 7bv1_Linear_Epitopes
select target_chain, 7bv1_Linear_Epitopes and chain C
color white, 7bv1_Linear_Epitopes
delete target_chain
select curr_residues, 7bv1_Linear_Epitopes and chain C and resi 36+37
color 0xFF2400, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/7bv1_Linear_Epitopes.pse, 7bv1_Linear_Epitopes, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/7bv1.pdb, 7bv1_Structural_Epitopes_3A
select target_chain, 7bv1_Structural_Epitopes_3A and chain C
color white, 7bv1_Structural_Epitopes_3A
delete target_chain
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/7bv1_Structural_Epitopes_3A.pse, 7bv1_Structural_Epitopes_3A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/7bv1.pdb, 7bv1_Structural_Epitopes_4A
select target_chain, 7bv1_Structural_Epitopes_4A and chain C
color white, 7bv1_Structural_Epitopes_4A
delete target_chain
select curr_residues, 7bv1_Structural_Epitopes_4A and chain C and resi 8
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Structural_Epitopes_4A and chain C and resi 11
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 7bv1_Structural_Epitopes_4A and chain C and resi 36+37
color 0xFF2400, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/7bv1_Structural_Epitopes_4A.pse, 7bv1_Structural_Epitopes_4A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/7bv1.pdb, 7bv1_Structural_Epitopes_5A
select target_chain, 7bv1_Structural_Epitopes_5A and chain C
color white, 7bv1_Structural_Epitopes_5A
delete target_chain
select curr_residues, 7bv1_Structural_Epitopes_5A and chain C and resi 8
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Structural_Epitopes_5A and chain C and resi 11
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 7bv1_Structural_Epitopes_5A and chain C and resi 36+37
color 0xFF2400, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/7bv1_Structural_Epitopes_5A.pse, 7bv1_Structural_Epitopes_5A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/7bv1.pdb, 7bv1_Structural_Epitopes_6A
select target_chain, 7bv1_Structural_Epitopes_6A and chain C
color white, 7bv1_Structural_Epitopes_6A
delete target_chain
select curr_residues, 7bv1_Structural_Epitopes_6A and chain C and resi 8
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Structural_Epitopes_6A and chain C and resi 11
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 7bv1_Structural_Epitopes_6A and chain C and resi 36+37
color 0xFF2400, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/7bv1_Structural_Epitopes_6A.pse, 7bv1_Structural_Epitopes_6A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/7bv1.pdb, 7bv1_Structural_Epitopes_7A
select target_chain, 7bv1_Structural_Epitopes_7A and chain C
color white, 7bv1_Structural_Epitopes_7A
delete target_chain
select curr_residues, 7bv1_Structural_Epitopes_7A and chain C and resi 8
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Structural_Epitopes_7A and chain C and resi 11
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 7bv1_Structural_Epitopes_7A and chain C and resi 36+37
color 0xFF2400, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/7bv1_Structural_Epitopes_7A.pse, 7bv1_Structural_Epitopes_7A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/7bv1.pdb, 7bv1_Structural_Epitopes_7.5A
select target_chain, 7bv1_Structural_Epitopes_7.5A and chain C
color white, 7bv1_Structural_Epitopes_7.5A
delete target_chain
select curr_residues, 7bv1_Structural_Epitopes_7.5A and chain C and resi 8
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Structural_Epitopes_7.5A and chain C and resi 11
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 7bv1_Structural_Epitopes_7.5A and chain C and resi 36+37
color 0xFF2400, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/7bv1_Structural_Epitopes_7.5A.pse, 7bv1_Structural_Epitopes_7.5A, -1, pse
load /Users/dmkonecki/Documents/WorkStationSync/Results/Covid19/Final_Run/DataSets_09142020_full/Shared/PDBs/7bv1.pdb, 7bv1_Structural_Epitopes_8A
select target_chain, 7bv1_Structural_Epitopes_8A and chain C
color white, 7bv1_Structural_Epitopes_8A
delete target_chain
select curr_residues, 7bv1_Structural_Epitopes_8A and chain C and resi 8
color 0xFFDC00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Structural_Epitopes_8A and chain C and resi 11
color 0xFF4900, curr_residues
delete curr_residues
select curr_residues, 7bv1_Structural_Epitopes_8A and chain C and resi 29
color 0xFF7A00, curr_residues
delete curr_residues
select curr_residues, 7bv1_Structural_Epitopes_8A and chain C and resi 36+37
color 0xFF2400, curr_residues
delete curr_residues
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/7bv1_Structural_Epitopes_8A.pse, 7bv1_Structural_Epitopes_8A, -1, pse
set grid_mode, 1
save /media/daniel/ExtraDrive1/Results/Covid19/Final_Run/coronavirus/COV2_ORF1ab_breakdown/nsp7/structure/7bv1_combined.pse, 7bv1_Normalized_Unique_Var_Count or 7bv1_Normalized_Var_Count or 7bv1_Normalized_Highest_Freq_Var_Count or 7bv1_Inverse_ET or 7bv1_Rescaled_EA_Highest_Freq or 7bv1_Normalized_Atom_SA or 7bv1_Linear_Epitopes or 7bv1_Structural_Epitopes_3A or 7bv1_Structural_Epitopes_4A or 7bv1_Structural_Epitopes_5A or 7bv1_Structural_Epitopes_6A or 7bv1_Structural_Epitopes_7A or 7bv1_Structural_Epitopes_7.5A or 7bv1_Structural_Epitopes_8A, -1, pse
delete all