Comparing distributions of experimental and random diffusion values (p-values for KS tests)
Seeds	Recipients	Randomize Seeds (degree-matched)	Randomize Recipients (degree-matched)	Randomize Seeds (uniform)	Randomize Recipients (uniform)
magma Exclusive	clinvar	3.28e-02	1.63e-03	7.48e-02	4.86e-04
clinvar Exclusive	magma	1.62e-01	8.34e-01	6.75e-07	9.27e-01
magma Exclusive	clinvar Exclusive	8.36e-02	4.22e-03	1.01e-01	1.96e-03
clinvar Exclusive	magma Exclusive	1.50e-01	8.64e-01	1.23e-05	9.74e-01
magma Exclusive	Overlap	9.92e-02	9.92e-02	1.18e-01	1.12e-01
clinvar Exclusive	Overlap	9.92e-02	9.92e-02	9.92e-02	1.05e-01
Overlap	Exclusives	8.99e-05	3.36e-02	8.24e-45	1.86e-02



Evaluating how well magma genes are linked to clinvar genes, comparing against random

ROC results
Seeds	Recipients	AUROC	Z-score for Random Seeds (degree-matched)	Z-score for Random Recipients (degree-matched)	Z-score for Random Seeds (uniform)	Z-score for Random Recipients (uniform)
magma Exclusive	clinvar	0.70	1.13	1.51	0.93	2.76
clinvar Exclusive	magma	0.51	2.15	0.11	0.48	0.56
magma Exclusive	clinvar Exclusive	0.69	0.98	1.56	0.86	3.02
clinvar Exclusive	magma Exclusive	0.51	1.41	-0.04	0.45	0.43
magma Exclusive	Overlap	0.99	1.44	2.11	1.12	1.68
clinvar Exclusive	Overlap	1.00	1.78	1.86	1.92	1.61
Overlap	Exclusives	0.55	3.61	2.30	2.04	2.60

PRC results
Seeds	Recipients	AUPRC	Z-score for Random Seeds (degree-matched)	Z-score for Random Recipients (degree-matched)	Z-score for Random Seeds (uniform)	Z-score for Random Recipients (uniform)
magma Exclusive	clinvar	0.00	2.97	7.07	1.71	4.48
clinvar Exclusive	magma	0.01	1.95	1.77	1.03	1.21
magma Exclusive	clinvar Exclusive	0.00	1.48	6.29	1.30	2.67
clinvar Exclusive	magma Exclusive	0.01	0.65	0.60	0.73	0.46
magma Exclusive	Overlap	0.00	5.88	9.64	2.38	1.23
clinvar Exclusive	Overlap	0.01	46.45	77.55	48.96	4.92
Overlap	Exclusives	0.02	12.97	8.49	4.33	6.79

Z-scores are computed for the experimental area under ROC or PRC based on distributions of the random areas under these curves
Seeds: Genes where diffusion signal starts FROM)
Recipients: Genes that receive the diffusion signal and that are in the other validated group
Random genes are selected either uniformly or degree matched



Number of genes
**	#Total	# Mapped in the network	Not mapped genes	 
magma Exclusive	233	219	ADGRL1;PRR27;C17orf107;ADA2;SAXO2;MICA;C2CD5;IGH;PSORS1C1;RARS1;CFAP74;CCDC168;SGF29;DRC3
clinvar Exclusive	20	19	MTND1
Overlap	1	1