Comparing distributions of experimental and random diffusion values (p-values for KS tests)
Seeds	Recipients	Randomize Seeds (degree-matched)	Randomize Recipients (degree-matched)	Randomize Seeds (uniform)	Randomize Recipients (uniform)
VIral Exclusive	AF0001	6.95e-04	4.40e-01	1.21e-01	7.81e-03
AF0001 Exclusive	VIral	9.09e-01	2.06e-01	4.25e-03	4.66e-07
VIral Exclusive	AF0001 Exclusive	2.32e-04	4.89e-01	3.16e-02	1.02e-02
AF0001 Exclusive	VIral Exclusive	8.84e-01	1.36e-01	1.65e-03	2.81e-07
VIral Exclusive	Overlap	7.34e-01	7.93e-01	6.52e-01	6.93e-01
AF0001 Exclusive	Overlap	3.83e-01	5.10e-01	2.40e-01	7.54e-01
Overlap	Exclusives	2.02e-01	3.15e-06	6.80e-06	4.22e-02



Evaluating how well VIral genes are linked to AF0001 genes, comparing against random

ROC results
Seeds	Recipients	AUROC	Z-score for Random Seeds (degree-matched)	Z-score for Random Recipients (degree-matched)	Z-score for Random Seeds (uniform)	Z-score for Random Recipients (uniform)
VIral Exclusive	AF0001	0.60	0.98	1.34	0.77	3.17
AF0001 Exclusive	VIral	0.68	0.65	1.79	0.77	6.50
VIral Exclusive	AF0001 Exclusive	0.60	0.62	1.28	1.14	2.97
AF0001 Exclusive	VIral Exclusive	0.68	0.56	1.76	0.96	5.99
VIral Exclusive	Overlap	0.41	0.73	-0.19	-0.01	-0.24
AF0001 Exclusive	Overlap	0.64	0.91	0.57	1.16	0.27
Overlap	Exclusives	0.53	-0.62	-5.52	-0.92	1.25

PRC results
Seeds	Recipients	AUPRC	Z-score for Random Seeds (degree-matched)	Z-score for Random Recipients (degree-matched)	Z-score for Random Seeds (uniform)	Z-score for Random Recipients (uniform)
VIral Exclusive	AF0001	0.01	0.07	0.61	0.25	1.72
AF0001 Exclusive	VIral	0.01	0.30	1.37	0.53	7.55
VIral Exclusive	AF0001 Exclusive	0.01	0.15	0.15	0.72	1.35
AF0001 Exclusive	VIral Exclusive	0.01	0.12	1.43	0.82	2.47
VIral Exclusive	Overlap	0.00	0.30	-0.36	-0.27	-0.34
AF0001 Exclusive	Overlap	0.00	-0.12	-0.14	0.13	-0.34
Overlap	Exclusives	0.01	-0.54	-4.09	-0.57	-0.25

Z-scores are computed for the experimental area under ROC or PRC based on distributions of the random areas under these curves
Seeds: Genes where diffusion signal starts FROM)
Recipients: Genes that receive the diffusion signal and that are in the other validated group
Random genes are selected either uniformly or degree matched



Number of genes
**	#Total	# Mapped in the network	Not mapped genes	 
VIral Exclusive	107	103	SNORA31;SRY;MBL3P;HLA-DRB4
AF0001 Exclusive	77	77	
Overlap	1	1