Comparing distributions of experimental and random diffusion values (p-values for KS tests)
Seeds	Recipients	Randomize Seeds (degree-matched)	Randomize Recipients (degree-matched)	Randomize Seeds (uniform)	Randomize Recipients (uniform)
EAML Exclusive	eQTL	3.37e-01	2.13e-01	6.41e-01	5.13e-02
eQTL Exclusive	EAML	5.64e-02	4.94e-01	6.90e-07	8.33e-01
EAML Exclusive	eQTL Exclusive	4.69e-01	2.92e-01	5.01e-01	1.09e-01
eQTL Exclusive	EAML Exclusive	1.11e-01	4.98e-01	1.83e-07	8.50e-01
EAML Exclusive	Overlap	2.84e-01	4.64e-01	3.72e-01	3.62e-01
eQTL Exclusive	Overlap	2.21e-02	1.82e-02	3.53e-02	3.69e-02
Overlap	Exclusives	2.02e-02	1.27e-02	2.40e-01	4.83e-02



Evaluating how well EAML genes are linked to eQTL genes, comparing against random

ROC results
Seeds	Recipients	AUROC	Z-score for Random Seeds (degree-matched)	Z-score for Random Recipients (degree-matched)	Z-score for Random Seeds (uniform)	Z-score for Random Recipients (uniform)
EAML Exclusive	eQTL	0.65	0.81	1.51	0.81	2.59
eQTL Exclusive	EAML	0.50	1.45	0.78	0.43	-0.11
EAML Exclusive	eQTL Exclusive	0.64	0.62	1.07	0.22	2.46
eQTL Exclusive	EAML Exclusive	0.49	0.79	0.85	0.33	-0.30
EAML Exclusive	Overlap	0.77	2.02	1.29	2.00	1.38
eQTL Exclusive	Overlap	0.89	2.92	2.99	2.11	2.21
Overlap	Exclusives	0.55	1.54	3.19	1.48	2.24

PRC results
Seeds	Recipients	AUPRC	Z-score for Random Seeds (degree-matched)	Z-score for Random Recipients (degree-matched)	Z-score for Random Seeds (uniform)	Z-score for Random Recipients (uniform)
EAML Exclusive	eQTL	0.00	1.24	1.25	1.05	2.29
eQTL Exclusive	EAML	0.01	1.12	0.56	0.21	0.13
EAML Exclusive	eQTL Exclusive	0.00	0.78	0.80	0.58	0.82
eQTL Exclusive	EAML Exclusive	0.01	0.73	0.62	0.13	-0.11
EAML Exclusive	Overlap	0.00	5.64	0.67	12.84	-0.06
eQTL Exclusive	Overlap	0.00	4.58	5.01	0.78	2.29
Overlap	Exclusives	0.02	3.08	6.43	2.77	4.97

Z-scores are computed for the experimental area under ROC or PRC based on distributions of the random areas under these curves
Seeds: Genes where diffusion signal starts FROM)
Recipients: Genes that receive the diffusion signal and that are in the other validated group
Random genes are selected either uniformly or degree matched



Number of genes
**	#Total	# Mapped in the network	Not mapped genes	 
EAML Exclusive	205	203	AL133500.1;PNMA6F
eQTL Exclusive	27	25	WNT3 ;LOC100131289
Overlap	2	2