Comparing distributions of experimental and random diffusion values (p-values for KS tests)
Seeds	Recipients	Randomize Seeds (degree-matched)	Randomize Recipients (degree-matched)	Randomize Seeds (uniform)	Randomize Recipients (uniform)
mudiff Exclusive	gp2	8.25e-01	9.46e-01	8.35e-01	3.62e-01
gp2 Exclusive	mudiff	2.02e-01	5.73e-01	1.73e-21	7.23e-01
mudiff Exclusive	gp2 Exclusive	6.15e-01	8.33e-01	6.88e-01	4.23e-01
gp2 Exclusive	mudiff Exclusive	2.04e-01	6.70e-01	8.42e-23	6.80e-01
mudiff Exclusive	Overlap	5.94e-01	5.35e-01	6.73e-01	4.75e-01
gp2 Exclusive	Overlap	1.98e-02	1.98e-02	1.98e-02	1.98e-02
Overlap	Exclusives	1.53e-03	4.42e-01	3.54e-05	1.95e-01



Evaluating how well mudiff genes are linked to gp2 genes, comparing against random

ROC results
Seeds	Recipients	AUROC	Z-score for Random Seeds (degree-matched)	Z-score for Random Recipients (degree-matched)	Z-score for Random Seeds (uniform)	Z-score for Random Recipients (uniform)
mudiff Exclusive	gp2	0.66	-0.41	0.02	-0.45	1.48
gp2 Exclusive	mudiff	0.51	1.29	0.35	0.94	0.47
mudiff Exclusive	gp2 Exclusive	0.66	-1.09	-0.44	-0.74	1.71
gp2 Exclusive	mudiff Exclusive	0.51	0.96	0.32	1.01	0.39
mudiff Exclusive	Overlap	0.71	0.66	0.60	0.56	0.80
gp2 Exclusive	Overlap	1.00	33.90	1.59	1.99	1.82
Overlap	Exclusives	0.52	0.38	0.84	0.62	0.96

PRC results
Seeds	Recipients	AUPRC	Z-score for Random Seeds (degree-matched)	Z-score for Random Recipients (degree-matched)	Z-score for Random Seeds (uniform)	Z-score for Random Recipients (uniform)
mudiff Exclusive	gp2	0.00	-0.07	-0.29	0.10	0.87
gp2 Exclusive	mudiff	0.01	0.27	0.04	0.38	0.09
mudiff Exclusive	gp2 Exclusive	0.00	-0.11	-0.30	0.22	-0.03
gp2 Exclusive	mudiff Exclusive	0.01	0.06	-0.25	-0.15	-0.25
mudiff Exclusive	Overlap	0.00	-0.10	-0.18	-0.15	-0.17
gp2 Exclusive	Overlap	0.01	6138.09	22.31	11.81	28.44
Overlap	Exclusives	0.01	1.87	2.25	1.00	1.47

Z-scores are computed for the experimental area under ROC or PRC based on distributions of the random areas under these curves
Seeds: Genes where diffusion signal starts FROM)
Recipients: Genes that receive the diffusion signal and that are in the other validated group
Random genes are selected either uniformly or degree matched



Number of genes
**	#Total	# Mapped in the network	Not mapped genes	 
mudiff Exclusive	158	158	
gp2 Exclusive	9	8	GBNMP
Overlap	1	1