Comparing distributions of experimental and random diffusion values (p-values for KS tests) Seeds Recipients Randomize Seeds (degree-matched) Randomize Recipients (degree-matched) Randomize Seeds (uniform) Randomize Recipients (uniform) 2mcs_wo_wavelet gp2_union 3.82e-01 5.05e-01 5.59e-01 1.03e-02 gp2_union 2mcs_wo_wavelet 4.86e-01 8.63e-01 1.08e-08 4.65e-01 Evaluating how well 2mcs_wo_wavelet genes are linked to gp2_union genes, comparing against random ROC results Seeds Recipients AUROC Z-score for Random Seeds (degree-matched) Z-score for Random Recipients (degree-matched) Z-score for Random Seeds (uniform) Z-score for Random Recipients (uniform) 2mcs_wo_wavelet gp2_union 0.69 0.22 0.57 0.46 2.42 gp2_union 2mcs_wo_wavelet 0.52 -0.14 0.14 0.59 0.83 PRC results Seeds Recipients AUPRC Z-score for Random Seeds (degree-matched) Z-score for Random Recipients (degree-matched) Z-score for Random Seeds (uniform) Z-score for Random Recipients (uniform) 2mcs_wo_wavelet gp2_union 0.00 -0.39 -0.34 -0.17 0.44 gp2_union 2mcs_wo_wavelet 0.00 0.05 -0.09 0.44 0.03 Z-scores are computed for the experimental area under ROC or PRC based on distributions of the random areas under these curves Seeds: Genes where diffusion signal starts FROM) Recipients: Genes that receive the diffusion signal and that are in the other validated group Random genes are selected either uniformly or degree matched Number of genes ** #Total # Mapped in the network Not mapped genes 2mcs_wo_wavelet 81 81 gp2_union 16 15 GBNMP