Comparing distributions of experimental and random diffusion values (p-values for KS tests)
Seeds	Recipients	Randomize Seeds (degree-matched)	Randomize Recipients (degree-matched)	Randomize Seeds (uniform)	Randomize Recipients (uniform)
sigma152 Exclusive	GSall	8.62e-01	5.12e-01	7.42e-01	1.21e-08
GSall Exclusive	sigma152	6.56e-02	2.98e-01	7.24e-04	1.00e-01
sigma152 Exclusive	GSall Exclusive	9.45e-01	4.80e-01	8.86e-01	2.75e-07
GSall Exclusive	sigma152 Exclusive	6.78e-02	2.41e-01	2.77e-03	3.67e-01
sigma152 Exclusive	Overlap	8.22e-01	9.47e-01	8.70e-01	1.19e-02
GSall Exclusive	Overlap	7.01e-04	1.16e-02	3.07e-06	6.97e-05
Overlap	Exclusives	3.83e-05	1.68e-06	3.57e-47	5.03e-14



Evaluating how well sigma152 genes are linked to GSall genes, comparing against random

ROC results
Seeds	Recipients	AUROC	Z-score for Random Seeds (degree-matched)	Z-score for Random Recipients (degree-matched)	Z-score for Random Seeds (uniform)	Z-score for Random Recipients (uniform)
sigma152 Exclusive	GSall	0.64	0.05	-0.64	-0.01	7.36
GSall Exclusive	sigma152	0.53	1.02	0.73	1.55	1.30
sigma152 Exclusive	GSall Exclusive	0.64	0.13	-0.47	-0.01	5.79
GSall Exclusive	sigma152 Exclusive	0.51	0.86	0.42	1.00	0.31
sigma152 Exclusive	Overlap	0.76	0.05	0.46	0.13	2.20
GSall Exclusive	Overlap	0.95	2.29	2.15	2.65	4.47
Overlap	Exclusives	0.66	3.18	6.44	3.27	9.84

PRC results
Seeds	Recipients	AUPRC	Z-score for Random Seeds (degree-matched)	Z-score for Random Recipients (degree-matched)	Z-score for Random Seeds (uniform)	Z-score for Random Recipients (uniform)
sigma152 Exclusive	GSall	0.01	-0.20	-0.66	-0.30	4.21
GSall Exclusive	sigma152	0.02	8.43	6.60	10.12	12.21
sigma152 Exclusive	GSall Exclusive	0.01	-0.15	-0.56	-0.16	6.27
GSall Exclusive	sigma152 Exclusive	0.01	-0.00	-0.16	-0.03	-0.33
sigma152 Exclusive	Overlap	0.00	-0.42	-0.15	-0.40	0.53
GSall Exclusive	Overlap	0.14	215.28	173.19	420.24	64.26
Overlap	Exclusives	0.05	8.41	29.92	14.77	37.06

Z-scores are computed for the experimental area under ROC or PRC based on distributions of the random areas under these curves
Seeds: Genes where diffusion signal starts FROM)
Recipients: Genes that receive the diffusion signal and that are in the other validated group
Random genes are selected either uniformly or degree matched



Number of genes
**	#Total	# Mapped in the network	Not mapped genes	 
sigma152 Exclusive	145	144	45546
GSall Exclusive	196	173	HLA class I;TERC;POUF5F1B;LOC146513;45358;SAT2B-AS1;SnoU13; PIGU;LINC00917;CDKN2B-AS1;COLCA1;LINC00603;SNHG15;RTELI;c11orf53;LINC00673;ZMIZ1-AS1;HLA class II;SCL22A3; MYNN;ANRIL;METRLN;LINC00675
Overlap	7	7