Comparing distributions of experimental and random diffusion values (p-values for KS tests)
Seeds	Recipients	Randomize Seeds (degree-matched)	Randomize Recipients (degree-matched)	Randomize Seeds (uniform)	Randomize Recipients (uniform)
ncSAI Exclusive	EA balanced	2.58e-01	6.51e-01	1.29e-01	3.13e-01
EA balanced Exclusive	ncSAI	5.24e-01	7.57e-01	8.60e-01	2.55e-01
ncSAI Exclusive	EA balanced Exclusive	3.25e-01	7.80e-01	2.21e-01	3.75e-01
EA balanced Exclusive	ncSAI Exclusive	5.47e-01	6.15e-01	7.66e-01	1.59e-01
ncSAI Exclusive	Overlap	7.00e-01	5.49e-01	6.86e-01	4.13e-01
EA balanced Exclusive	Overlap	4.37e-01	5.08e-01	4.81e-01	6.93e-01
Overlap	Exclusives	8.11e-01	9.78e-01	1.12e-05	5.63e-01



Evaluating how well ncSAI genes are linked to EA balanced genes, comparing against random

ROC results
Seeds	Recipients	AUROC	Z-score for Random Seeds (degree-matched)	Z-score for Random Recipients (degree-matched)	Z-score for Random Seeds (uniform)	Z-score for Random Recipients (uniform)
ncSAI Exclusive	EA balanced	0.51	0.71	0.69	0.89	0.45
EA balanced Exclusive	ncSAI	0.55	1.10	0.81	1.16	1.46
ncSAI Exclusive	EA balanced Exclusive	0.51	0.76	0.68	0.84	0.57
EA balanced Exclusive	ncSAI Exclusive	0.55	1.40	1.23	1.11	1.99
ncSAI Exclusive	Overlap	0.54	-0.27	-0.13	-0.40	0.40
EA balanced Exclusive	Overlap	0.47	-1.16	-1.19	-1.05	-0.29
Overlap	Exclusives	0.51	-0.43	-0.12	-0.04	0.67

PRC results
Seeds	Recipients	AUPRC	Z-score for Random Seeds (degree-matched)	Z-score for Random Recipients (degree-matched)	Z-score for Random Seeds (uniform)	Z-score for Random Recipients (uniform)
ncSAI Exclusive	EA balanced	0.01	0.60	0.88	1.53	0.12
EA balanced Exclusive	ncSAI	0.01	0.25	1.20	0.75	1.36
ncSAI Exclusive	EA balanced Exclusive	0.01	1.32	0.75	1.28	0.80
EA balanced Exclusive	ncSAI Exclusive	0.01	0.29	1.67	0.78	2.22
ncSAI Exclusive	Overlap	0.00	-0.25	-0.18	-0.27	-0.10
EA balanced Exclusive	Overlap	0.00	-0.24	-0.88	-0.50	-0.10
Overlap	Exclusives	0.01	-0.79	-0.52	-0.52	-0.18

Z-scores are computed for the experimental area under ROC or PRC based on distributions of the random areas under these curves
Seeds: Genes where diffusion signal starts FROM)
Recipients: Genes that receive the diffusion signal and that are in the other validated group
Random genes are selected either uniformly or degree matched



Number of genes
**	#Total	# Mapped in the network	Not mapped genes	 
ncSAI Exclusive	113	113	
EA balanced Exclusive	137	136	CHURC1-FNTB
Overlap	6	6