Comparing distributions of experimental and random diffusion values (p-values for KS tests)
Seeds	Recipients	Randomize Seeds (degree-matched)	Randomize Recipients (degree-matched)	Randomize Seeds (uniform)	Randomize Recipients (uniform)
EOAD eqtl 28 Exclusive	lambert	5.82e-02	2.55e-01	1.35e-02	1.88e-04
lambert Exclusive	EOAD eqtl 28	2.66e-01	9.51e-01	2.42e-01	2.51e-01
EOAD eqtl 28 Exclusive	lambert Exclusive	2.96e-02	2.58e-01	4.86e-03	4.02e-04
lambert Exclusive	EOAD eqtl 28 Exclusive	1.30e-01	9.59e-01	4.04e-01	3.97e-01
EOAD eqtl 28 Exclusive	Overlap	8.04e-01	5.17e-01	6.61e-01	1.74e-01
lambert Exclusive	Overlap	9.85e-05	5.17e-01	9.85e-05	1.48e-03
Overlap	Exclusives	8.21e-03	1.21e-04	2.04e-25	3.13e-06



Evaluating how well EOAD eqtl 28 genes are linked to lambert genes, comparing against random

ROC results
Seeds	Recipients	AUROC	Z-score for Random Seeds (degree-matched)	Z-score for Random Recipients (degree-matched)	Z-score for Random Seeds (uniform)	Z-score for Random Recipients (uniform)
EOAD eqtl 28 Exclusive	lambert	0.64	2.22	2.04	1.82	5.91
lambert Exclusive	EOAD eqtl 28	0.54	-0.35	-0.07	0.77	1.42
EOAD eqtl 28 Exclusive	lambert Exclusive	0.64	2.17	1.97	2.25	5.11
lambert Exclusive	EOAD eqtl 28 Exclusive	0.53	-0.78	-0.19	0.37	1.20
EOAD eqtl 28 Exclusive	Overlap	0.85	0.73	1.21	1.22	1.87
lambert Exclusive	Overlap	0.99	3.52	1.77	2.33	2.28
Overlap	Exclusives	0.63	2.20	4.47	2.08	5.39

PRC results
Seeds	Recipients	AUPRC	Z-score for Random Seeds (degree-matched)	Z-score for Random Recipients (degree-matched)	Z-score for Random Seeds (uniform)	Z-score for Random Recipients (uniform)
EOAD eqtl 28 Exclusive	lambert	0.01	1.86	2.22	1.35	6.82
lambert Exclusive	EOAD eqtl 28	0.01	8.07	6.32	2.61	2.66
EOAD eqtl 28 Exclusive	lambert Exclusive	0.01	1.93	1.76	1.50	3.56
lambert Exclusive	EOAD eqtl 28 Exclusive	0.01	4.31	4.48	1.91	2.21
EOAD eqtl 28 Exclusive	Overlap	0.00	0.25	3.70	2.12	5.55
lambert Exclusive	Overlap	0.02	9.56	17.47	39.99	35.53
Overlap	Exclusives	0.02	7.80	16.81	8.35	13.42

Z-scores are computed for the experimental area under ROC or PRC based on distributions of the random areas under these curves
Seeds: Genes where diffusion signal starts FROM)
Recipients: Genes that receive the diffusion signal and that are in the other validated group
Random genes are selected either uniformly or degree matched



Number of genes
**	#Total	# Mapped in the network	Not mapped genes	 
EOAD eqtl 28 Exclusive	94	94	
lambert Exclusive	100	94	IGH;MS4A;AC074212.3;APT8B4;TNSF12;TNSF13
Overlap	2	2