Comparing distributions of experimental and random diffusion values (p-values for KS tests)
Seeds	Recipients	Randomize Seeds (degree-matched)	Randomize Recipients (degree-matched)	Randomize Seeds (uniform)	Randomize Recipients (uniform)
LBD Exclusive	Juan genes	4.30e-02	9.02e-02	1.09e-01	8.79e-04
Juan genes Exclusive	LBD	8.87e-01	1.52e-01	3.51e-07	2.76e-01
LBD Exclusive	Juan genes Exclusive	1.03e-01	2.05e-01	2.17e-01	3.55e-03
Juan genes Exclusive	LBD Exclusive	8.70e-01	2.23e-01	7.98e-08	2.05e-01
LBD Exclusive	Overlap	1.39e-01	1.98e-02	2.38e-01	1.39e-01
Juan genes Exclusive	Overlap	8.32e-01	8.91e-01	5.74e-01	4.36e-01
Overlap	Exclusives	1.06e-05	7.69e-02	1.07e-31	1.25e-02



Evaluating how well LBD genes are linked to Juan genes genes, comparing against random

ROC results
Seeds	Recipients	AUROC	Z-score for Random Seeds (degree-matched)	Z-score for Random Recipients (degree-matched)	Z-score for Random Seeds (uniform)	Z-score for Random Recipients (uniform)
LBD Exclusive	Juan genes	0.73	1.97	1.93	1.49	3.64
Juan genes Exclusive	LBD	0.53	2.27	2.40	1.45	1.31
LBD Exclusive	Juan genes Exclusive	0.72	1.60	1.72	1.27	3.54
Juan genes Exclusive	LBD Exclusive	0.53	1.79	1.91	1.82	1.24
LBD Exclusive	Overlap	0.93	1.36	1.62	1.07	1.53
Juan genes Exclusive	Overlap	0.75	-0.06	0.21	0.35	1.02
Overlap	Exclusives	0.53	1.18	0.94	0.94	1.44

PRC results
Seeds	Recipients	AUPRC	Z-score for Random Seeds (degree-matched)	Z-score for Random Recipients (degree-matched)	Z-score for Random Seeds (uniform)	Z-score for Random Recipients (uniform)
LBD Exclusive	Juan genes	0.00	1.74	1.59	0.98	1.14
Juan genes Exclusive	LBD	0.01	1.36	1.92	1.00	0.71
LBD Exclusive	Juan genes Exclusive	0.00	1.21	1.08	0.67	0.04
Juan genes Exclusive	LBD Exclusive	0.01	1.32	1.84	1.47	0.94
LBD Exclusive	Overlap	0.00	1.19	3.44	0.06	0.39
Juan genes Exclusive	Overlap	0.00	-0.37	-0.41	-0.14	-0.13
Overlap	Exclusives	0.01	1.46	0.77	0.58	0.82

Z-scores are computed for the experimental area under ROC or PRC based on distributions of the random areas under these curves
Seeds: Genes where diffusion signal starts FROM)
Recipients: Genes that receive the diffusion signal and that are in the other validated group
Random genes are selected either uniformly or degree matched



Number of genes
**	#Total	# Mapped in the network	Not mapped genes	 
LBD Exclusive	200	200	
Juan genes Exclusive	21	21	
Overlap	1	1